PRGDB00047551 (nucleotide binding site leucine-rich repeat disease resistance protein)

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nucleotide binding site leucine-rich repeat disease resistance protein
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 40644869 (AJ581776)
Gene Class NL
Domain Type NBS, LRR
Gene Species Pyrus communis

Comment?

Pyrus communis partial gene for putative nucleotide binding site leucine-rich repeat disease resistance protein, clone RGA09.

DNA Sequence

ATGGGTGGGGTCGGAAAGACGACAGCTGCCAAAGCCATTTATAACCACATTCATCATAAGTTCCAATTCAAAAGCTTCCTTAACGCTAGTAAATATGATCTGGTTGATTTGCAAGGAAAACTCGTTTCTGACATCTTGAAACAGACCGAGTCTAAGATAACTAGTGTTGATGGAGGTATCAGTCTGATAAAAAATCATCTCCAACGTAGAAGTGTACTTGTCATTATTGACAATGTAGACAAAGTGGAACAACTAAATGCAATGGCTGGAAATCGTGATTGGTTTGGCCCAGGAAGTAGAATTATCATAACGACACGAGATGAACATTTACTAAAGCAAGTGAAAATGAAAGTGGACAAGACATATCCCCTTAAGGAAATGAATGAAGAAGAAGCTCTGAAGCTCTTTAGTTGGCATGCCTTTGGAAATAGTTGGCCTAATGAAGGATATCTTGAACTCTCAAAAGAGGTGGTTTCTTACTGTGGTCGTCTTGCCAACACCCCCCATA


Protein sequences

Name Description Sequence
nucleotide binding site leucine-rich repeat disease resistance protein nucleotide binding site leucine-rich repeat disease resistance protein [Pyrus communis].

MGGVGKTTAAKAIYNHIHHKFQFKSFLNASKYDLVDLQGKLVSDILKQTESKITSVDGGISLIKNHLQRRSVLVIIDNVDKVEQLNAMAGNRDWFGPGSRIIITTRDEHLLKQVKMKVDKTYPLKEMNEEEALKLFSWHAFGNSWPNEGYLELSKEVVSYCGRLANTPH


Domains

Domain Start-End Description Sequence

HMMPfam: PF00931
IPR002182
1-162 NB-ARC,NBS
NB-ARC

MGGVGKTTAAKAIYNHIHHKFQFKSFLNASKYDLVDLQGKLVSDILKQTESKITSVDGGISLIKNHLQRRSVLVIIDNVDKVEQLNAMAGNRDWFGPGSRIIITTRDEHLLKQVKMKVDKTYPLKEMNEEEALKLFSWHAFGNSWPNEGYLELSKEVVSYCG

HMMPanther: PTHR11017:SF20
1-164 PTHR11017:SF20,SUBFAMILY NOT NAMED

MGGVGKTTAAKAIYNHIHHKFQFKSFLNASKYDLVDLQGKLVSDILKQTESKITSVDGGISLIKNHLQRRSVLVIIDNVDKVEQLNAMAGNRDWFGPGSRIIITTRDEHLLKQVKMKVDKTYPLKEMNEEEALKLFSWHAFGNSWPNEGYLELSKEVVSYCGRL

HMMPanther: PTHR11017
1-164 PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

MGGVGKTTAAKAIYNHIHHKFQFKSFLNASKYDLVDLQGKLVSDILKQTESKITSVDGGISLIKNHLQRRSVLVIIDNVDKVEQLNAMAGNRDWFGPGSRIIITTRDEHLLKQVKMKVDKTYPLKEMNEEEALKLFSWHAFGNSWPNEGYLELSKEVVSYCGRL

superfamily: SSF52540
1-166 SSF52540

MGGVGKTTAAKAIYNHIHHKFQFKSFLNASKYDLVDLQGKLVSDILKQTESKITSVDGGISLIKNHLQRRSVLVIIDNVDKVEQLNAMAGNRDWFGPGSRIIITTRDEHLLKQVKMKVDKTYPLKEMNEEEALKLFSWHAFGNSWPNEGYLELSKEVVSYCGRLAN

Gene3D: G3DSA:3.40.50.300
3-124 G3DSA:3.40.50.300

GVGKTTAAKAIYNHIHHKFQFKSFLNASKYDLVDLQGKLVSDILKQTESKITSVDGGISLIKNHLQRRSVLVIIDNVDKVEQLNAMAGNRDWFGPGSRIIITTRDEHLLKQVKMKVDKTYPL






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Analyses

Blast

Blast matches against Reference R-Genes. Show


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