PRGDB00047552 (nucleotide binding site leucine-rich repeat disease resistance protein)

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nucleotide binding site leucine-rich repeat disease resistance protein
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 40644865 (AJ581774)
Gene Class NL
Domain Type NBS, LRR, Others
Gene Species Pyrus communis

Comment?

Pyrus communis partial gene for putative nucleotide binding site leucine-rich repeat disease resistance protein, clone RGA07.

DNA Sequence

ATGGGTGGCGTGGGCAAGACCACCCTTGCTAAGCTTGTTTATGATAGAATCTTTCATCATTTTGAAGTTCACTGCTTTCTCGGCAACATCAGAGAGGTTTCTAACGTTGATCTTCAAAAAAGACTTCTTTTCCCGGTGTTGAGGGAAAAGATTGAAGAACCTTGGGATGAAGAGCGCGGAATCATTTTCACTAAGAAGTGCTTACGCAACAAAAAGGTTGTTCTTGTACTTGATGATGTGGATCACATAAACCAGTTACAAGTACTAGCTGGAAAGGAAGATTGGTTTGGCATGGGAAGTAGAATTATCATTACAACTAGAAATGAACGTCTGCTAGTCCAGCATAACATAACATATTGTTATAATGTCGAAGTGTTAGGTAAGGGCGCAGCTCTTGAACTGTTTAGCCTACATGCCTTCAAGAAAAATCTGCCTGAGGATGGGTTTTGGGAACTGTCAACGTATTTCATTAATTATGCTGGAGGTCTCCCCTTCGCGCTAAGGTAA


Protein sequences

Name Description Sequence
nucleotide binding site leucine-rich repeat disease resistance protein nucleotide binding site leucine-rich repeat disease resistance protein [Pyrus communis].

MGGVGKTTLAKLVYDRIFHHFEVHCFLGNIREVSNVDLQKRLLFPVLREKIEEPWDEERGIIFTKKCLRNKKVVLVLDDVDHINQLQVLAGKEDWFGMGSRIIITTRNERLLVQHNITYCYNVEVLGKGAALELFSLHAFKKNLPEDGFWELSTYFINYAGGLPFALR

Domains

Domain Start-End Description Sequence

HMMPanther: PTHR11017:SF20
1-168 PTHR11017:SF20,SUBFAMILY NOT NAMED

MGGVGKTTLAKLVYDRIFHHFEVHCFLGNIREVSNVDLQKRLLFPVLREKIEEPWDEERGIIFTKKCLRNKKVVLVLDDVDHINQLQVLAGKEDWFGMGSRIIITTRNERLLVQHNITYCYNVEVLGKGAALELFSLHAFKKNLPEDGFWELSTYFINYAGGLPFALR

HMMPanther: PTHR11017
1-168 PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

MGGVGKTTLAKLVYDRIFHHFEVHCFLGNIREVSNVDLQKRLLFPVLREKIEEPWDEERGIIFTKKCLRNKKVVLVLDDVDHINQLQVLAGKEDWFGMGSRIIITTRNERLLVQHNITYCYNVEVLGKGAALELFSLHAFKKNLPEDGFWELSTYFINYAGGLPFALR

superfamily: SSF52540
1-167 SSF52540

MGGVGKTTLAKLVYDRIFHHFEVHCFLGNIREVSNVDLQKRLLFPVLREKIEEPWDEERGIIFTKKCLRNKKVVLVLDDVDHINQLQVLAGKEDWFGMGSRIIITTRNERLLVQHNITYCYNVEVLGKGAALELFSLHAFKKNLPEDGFWELSTYFINYAGGLPFAL

HMMPfam: PF00931
IPR002182
1-167 NB-ARC,NBS
NB-ARC

MGGVGKTTLAKLVYDRIFHHFEVHCFLGNIREVSNVDLQKRLLFPVLREKIEEPWDEERGIIFTKKCLRNKKVVLVLDDVDHINQLQVLAGKEDWFGMGSRIIITTRNERLLVQHNITYCYNVEVLGKGAALELFSLHAFKKNLPEDGFWELSTYFINYAGGLPFAL

Gene3D: G3DSA:3.40.50.300
3-112 G3DSA:3.40.50.300

GVGKTTLAKLVYDRIFHHFEVHCFLGNIREVSNVDLQKRLLFPVLREKIEEPWDEERGIIFTKKCLRNKKVVLVLDDVDHINQLQVLAGKEDWFGMGSRIIITTRNERLL

FPrintScan: PR00364
IPR000767
67-81 DISEASERSIST
Disease resistance protein

CLRNKKVVLVLDDVD

FPrintScan: PR00364
IPR000767
160-168 DISEASERSIST
Disease resistance protein

AGGLPFALR






List of Contributions

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Analyses

Blast

Blast matches against Reference R-Genes. Show


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