PRGDB00047583 (pNd1)

pNd1
Gene Type	Putative_R-Genes,_collected_from_NCBI_Protein
GenBank	3176742 (U97217)
Gene Class	NL
Domain Type	NBS, LRR, Others
Gene Species	Arabidopsis thaliana
	Comment?

Arabidopsis thaliana disease resistance protein homolog (pNd1) gene, partial cds.

DNA Sequence

GGTGGGGTAGGGAAGACAACGTTAATGCAGAGCGTTAACAACGAGCTGATCACAAAAGGACATCAGTATGATGTACTGATTTGGGTTCAAATGTCCAGAGAATTCGGCGAGTGTACAATTCAGCAAGCCGTTGGAGCACGGTTGGGTTTATCTTGGGACGAGAAGGAGACCGGCGAAAACAGAGCTTTGAAGATATACAGAGCTTTGAGACAGAAACGTTTCTTGTTGTTGCTAGATGATGTCTGGGAAGGGATAGACTTGGAGAAAACTGGAGTTCCTCGACCTGACAGGGAAAACAAATGCAAGGTGATGTTCACGACACGGTCTATAGCATTATGCAACAATATGGGTGCGGAATACAAGTTGAGAGTGGAGTTTCTGGAGAAGAAACACGCGTGGGAGCTGTTCTGTAGTAAGGTATGGAGAAAAGATCTTTTAGAGTCATCATCAATTCGCCGGCTCGCGGAGATTATAGTGAGTAAATGTGGAGGACTCCCCCTCGCCCTC

Protein sequences

Name	Description	Sequence
disease resistance protein homolog	disease resistance protein homolog [Arabidopsis thaliana].	GGVGKTTLMQSVNNELITKGHQYDVLIWVQMSREFGECTIQQAVGARLGLSWDEKETGENRALKIYRALRQKRFLLLLDDVWEGIDLEKTGVPRPDRENKCKVMFTTRSIALCNNMGAEYKLRVEFLEKKHAWELFCSKVWRKDLLESSSIRRLAEIIVSKCGGLPLAL

Domains

Domain	Start-End	Description	Sequence
superfamily: SSF52540	1-169	P-loop containing nucleoside triphosphate hydrolases	GGVGKTTLMQSVNNELITKGHQYDVLIWVQMSREFGECTIQQAVGARLGLSWDEKETGENRALKIYRALRQKRFLLLLDDVWEGIDLEKTGVPRPDRENKCKVMFTTRSIALCNNMGAEYKLRVEFLEKKHAWELFCSKVWRKDLLESSSIRRLAEIIVSKCGGLPLAL
HMMPfam: PF00931 IPR002182	1-169	NB-ARC,NBS NB-ARC	GGVGKTTLMQSVNNELITKGHQYDVLIWVQMSREFGECTIQQAVGARLGLSWDEKETGENRALKIYRALRQKRFLLLLDDVWEGIDLEKTGVPRPDRENKCKVMFTTRSIALCNNMGAEYKLRVEFLEKKHAWELFCSKVWRKDLLESSSIRRLAEIIVSKCGGLPLAL
HMMPanther: PTHR23155:SF105	1-89	RPS2 (RESISTANT TO P. SYRINGAE 2),RPS2 (RESISTANT TO P. SYRINGAE 2)	GGVGKTTLMQSVNNELITKGHQYDVLIWVQMSREFGECTIQQAVGARLGLSWDEKETGENRALKIYRALRQKRFLLLLDDVWEGIDLEK
HMMPanther: PTHR23155	1-89	FAMILY NOT NAMED,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN	GGVGKTTLMQSVNNELITKGHQYDVLIWVQMSREFGECTIQQAVGARLGLSWDEKETGENRALKIYRALRQKRFLLLLDDVWEGIDLEK
Gene3D: G3DSA:3.40.50.300	2-120	no description	GVGKTTLMQSVNNELITKGHQYDVLIWVQMSREFGECTIQQAVGARLGLSWDEKETGENRALKIYRALRQKRFLLLLDDVWEGIDLEKTGVPRPDRENKCKVMFTTRSIALCNNMGAEY
FPrintScan: PR00364 IPR000767	68-82	DISEASERSIST Disease resistance protein	ALRQKRFLLLLDDVW
FPrintScan: PR00364 IPR000767	162-169	DISEASERSIST Disease resistance protein	CGGLPLAL

List of References

E Speulman, D Bouchez, E B Holub, J L Beynon
Disease resistance gene homologs correlate with disease resistance loci of Arabidopsis thaliana.
Plant J.: 1998, 14(4);467-74
PubMed:9670562 WorldCat.org (P p)

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Analyses

Blast

Blast matches against Reference R-Genes. Show