PRGDB00047897 (MPL12-5-BN-1)

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MPL12-5-BN-1
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 13924632 (AF258289)
Gene Class T
Domain Type TIR, LRR
Gene Species Brassica napus

Comment?

Brassica napus cultivar Darmor disease resistance protein homolog (MPL12-5-BN-1) gene, partial cds.

DNA Sequence

ATACCTGTTTTCTACCGGTTGGATCCTTCCCATGTGAGGAAACAAACCGGTGCCTTTGGGAAAATATTTGAAGAAACATGCAAGAATCAAACAGAGGAAGTGATAATAATTCAATGGAGGAGAGCTTTGACCGATGTAGCCAATACTCTCGGGTATCATTCAGTAAACTGGGGTAACGAAGCTGCAATGGTTGAAGAAATCGCCAATGATGTTTTGGATAAACTACTTTTAACTTCATCGAAGGATTCAGAGAACTTTGTGGGCATTGAAGATCATCTAGCAAAACTGAGTGTATTGCTTCAGTTGGACGCGGAGGAAGTGAGGATGGTTGGTTTATGGGGTTCTTCAGGGATCGGCAAGACTACAATTGCAAGAGTTCTGTTTCAACGACTTTCTCGA


Protein sequences

Name Description Sequence
disease resistance protein homolog disease resistance protein homolog [Brassica napus].

IPVFYRLDPSHVRKQTGAFGKIFEETCKNQTEEVIIIQWRRALTDVANTLGYHSVNWGNEAAMVEEIANDVLDKLLLTSSKDSENFVGIEDHLAKLSVLLQLDAEEVRMVGLWGSSGIGKTTIARVLFQRLSR

Domains

Domain Start-End Description Sequence

superfamily: SSF52200
IPR000157
1-52 TIR
Toll/interleukin-1 receptor homology (TIR) domain

IPVFYRLDPSHVRKQTGAFGKIFEETCKNQTEEVIIIQWRRALTDVANTLGY

ProfileScan: PS50104
IPR000157
1-49 TIR
Toll/interleukin-1 receptor homology (TIR) domain

IPVFYRLDPSHVRKQTGAFGKIFEETCKNQTEEVIIIQWRRALTDVANT

HMMPanther: PTHR23155:SF292
1-133 PTHR23155:SF292,SUBFAMILY NOT NAMED

IPVFYRLDPSHVRKQTGAFGKIFEETCKNQTEEVIIIQWRRALTDVANTLGYHSVNWGNEAAMVEEIANDVLDKLLLTSSKDSENFVGIEDHLAKLSVLLQLDAEEVRMVGLWGSSGIGKTTIARVLFQRLSR

HMMPfam: PF01582
IPR000157
1-44 TIR
Toll/interleukin-1 receptor homology (TIR) domain

IPVFYRLDPSHVRKQTGAFGKIFEETCKNQTEEVIIIQWRRALT

HMMPanther: PTHR23155
1-133 PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

IPVFYRLDPSHVRKQTGAFGKIFEETCKNQTEEVIIIQWRRALTDVANTLGYHSVNWGNEAAMVEEIANDVLDKLLLTSSKDSENFVGIEDHLAKLSVLLQLDAEEVRMVGLWGSSGIGKTTIARVLFQRLSR

superfamily: SSF52540
69-133 SSF52540

NDVLDKLLLTSSKDSENFVGIEDHLAKLSVLLQLDAEEVRMVGLWGSSGIGKTTIARVLFQRLSR

Gene3D: G3DSA:3.40.50.300
108-132 G3DSA:3.40.50.300

RMVGLWGSSGIGKTTIARVLFQRLS






List of Contributions

There has not been any contribution yet.


Analyses

Blast

Blast matches against Reference R-Genes. Show


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