PRGDB00047911 (nucleotide binding site leucine-rich repeat disease resistance protein)

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nucleotide binding site leucine-rich repeat disease resistance protein
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 209981191 (EU939859)
Gene Class NL
Domain Type NBS, LRR, Others
Gene Species Pyrus hybrid cultivar

Comment?

Pyrus hybrid cultivar clone Ph-Byh-1 nucleotide binding site leucine-rich repeat disease resistance protein gene, partial cds.

DNA Sequence

GGTTCCGGAAAAACAACTGCTGCTGACGCCATTTATAACAAAATTCATCATCGCTTCGAGTTTAAATGTCACCTTGGCGATGTTAGCGACTTTGAACATCGATATGGTTTGGTTTGTTTGCAAAAACAACTTGTTTCTCACATTTTGAAACAAACCACCATATTCCAGATAAATAGTGTCAGTGAAGGGATCAGTGTAATAAAACGACATCTTCGACGTCGAAAGGTACTTATTGTTATTGATAATGTAGATAAAGTGGAGCAACTAGGTGCAATAGCTGGAGATCGTGAGTGGTTTGGTCCAGGAAGTATAATTATCATAACAACAAGAGATGAGCATTTACTAAATCAAGTGAGAGTGAATATGAGATATCCAGCTAAGAAAATGAATGAAGAGGAAGCTCTTGAGCTTTTCAGTTGGCATTCATTTGAAAATAATTGCCCTAAAGATGAATGTCTTGAATTGTCAAGGAAGGTAGTTTCTTACTGTGGAGGTTTACCCTTAGCCCT


Protein sequences

Name Description Sequence
nucleotide binding site leucine-rich repeat disease resistance protein nucleotide binding site leucine-rich repeat disease resistance protein [Pyrus hybrid cultivar].

GSGKTTAADAIYNKIHHRFEFKCHLGDVSDFEHRYGLVCLQKQLVSHILKQTTIFQINSVSEGISVIKRHLRRRKVLIVIDNVDKVEQLGAIAGDREWFGPGSIIIITTRDEHLLNQVRVNMRYPAKKMNEEEALELFSWHSFENNCPKDECLELSRKVVSYCGGLPLAL

Domains

Domain Start-End Description Sequence

HMMPfam: PF00931
IPR002182
1-170 NB-ARC,NBS
NB-ARC

GSGKTTAADAIYNKIHHRFEFKCHLGDVSDFEHRYGLVCLQKQLVSHILKQTTIFQINSVSEGISVIKRHLRRRKVLIVIDNVDKVEQLGAIAGDREWFGPGSIIIITTRDEHLLNQVRVNMRYPAKKMNEEEALELFSWHSFENNCPKDECLELSRKVVSYCGGLPLAL

Gene3D: G3DSA:3.40.50.300
1-117 G3DSA:3.40.50.300

GSGKTTAADAIYNKIHHRFEFKCHLGDVSDFEHRYGLVCLQKQLVSHILKQTTIFQINSVSEGISVIKRHLRRRKVLIVIDNVDKVEQLGAIAGDREWFGPGSIIIITTRDEHLLNQ

superfamily: SSF52540
1-170 SSF52540

GSGKTTAADAIYNKIHHRFEFKCHLGDVSDFEHRYGLVCLQKQLVSHILKQTTIFQINSVSEGISVIKRHLRRRKVLIVIDNVDKVEQLGAIAGDREWFGPGSIIIITTRDEHLLNQVRVNMRYPAKKMNEEEALELFSWHSFENNCPKDECLELSRKVVSYCGGLPLAL

HMMPanther: PTHR11017
3-170 PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

GKTTAADAIYNKIHHRFEFKCHLGDVSDFEHRYGLVCLQKQLVSHILKQTTIFQINSVSEGISVIKRHLRRRKVLIVIDNVDKVEQLGAIAGDREWFGPGSIIIITTRDEHLLNQVRVNMRYPAKKMNEEEALELFSWHSFENNCPKDECLELSRKVVSYCGGLPLAL

HMMPanther: PTHR11017:SF20
3-170 PTHR11017:SF20,SUBFAMILY NOT NAMED

GKTTAADAIYNKIHHRFEFKCHLGDVSDFEHRYGLVCLQKQLVSHILKQTTIFQINSVSEGISVIKRHLRRRKVLIVIDNVDKVEQLGAIAGDREWFGPGSIIIITTRDEHLLNQVRVNMRYPAKKMNEEEALELFSWHSFENNCPKDECLELSRKVVSYCGGLPLAL

FPrintScan: PR00364
IPR000767
70-84 DISEASERSIST
Disease resistance protein

HLRRRKVLIVIDNVD

FPrintScan: PR00364
IPR000767
163-170 DISEASERSIST
Disease resistance protein

CGGLPLAL






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