PRGDB00047914 (nucleotide binding site leucine-rich repeat disease resistance protein)

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nucleotide binding site leucine-rich repeat disease resistance protein
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 209981185 (EU939856)
Gene Class NL
Domain Type NBS, LRR
Gene Species Pyrus ussuriensis

Comment?

Pyrus ussuriensis clone Pu-Jsh-3 nucleotide binding site leucine-rich repeat disease resistance protein gene, partial cds.

DNA Sequence

GGATCTGGTAAAACAACAGCTGCCAAACCCATTTATAACCAAATTCATCATAAGTTCCAATTCAAAAGTTTCCTTGCCAACGTTAGTGAATATGATCTGGTTGATTTGCAAGGAAAACTTGTTTCTGACATCTTGAAACAGACCGGGTCTAAGGTAACCAGTGTTGATGGAGGTATCAGTCTGATAAAAAATCATCTCCAACGTAGAAGCGTACTTGTCATTATTGACAATGTAGACAAAGTGGAACAACTAAATGCAATAGCTGGAAATCGTGATTGGTTTGGCCCAGGAAGTAGAATTATCATAACGACACGAGATGAACGTTTACTAAAGCAAGTGAACATGAAAGTGGACAAGACATATCCGCTTAAGGAAATGAATGAAGAAGAAGCTCTAAAGCTCTTTAGTTTGCATGCCTTTGGAAATGGTTGTCCTGATAAAGGATATCTTGAACTCTCAAAGGAGGTTGTTTCTTACTGTGGTGGTTTACCCTTAGCCCT


Protein sequences

Name Description Sequence
nucleotide binding site leucine-rich repeat disease resistance protein nucleotide binding site leucine-rich repeat disease resistance protein [Pyrus ussuriensis].

GSGKTTAAKPIYNQIHHKFQFKSFLANVSEYDLVDLQGKLVSDILKQTGSKVTSVDGGISLIKNHLQRRSVLVIIDNVDKVEQLNAIAGNRDWFGPGSRIIITTRDERLLKQVNMKVDKTYPLKEMNEEEALKLFSLHAFGNGCPDKGYLELSKEVVSYCGGLPLAL


Domains

Domain Start-End Description Sequence

HMMPfam: PF00931
IPR002182
1-167 NB-ARC,NBS
NB-ARC

GSGKTTAAKPIYNQIHHKFQFKSFLANVSEYDLVDLQGKLVSDILKQTGSKVTSVDGGISLIKNHLQRRSVLVIIDNVDKVEQLNAIAGNRDWFGPGSRIIITTRDERLLKQVNMKVDKTYPLKEMNEEEALKLFSLHAFGNGCPDKGYLELSKEVVSYCGGLPLAL

Gene3D: G3DSA:3.40.50.300
1-123 G3DSA:3.40.50.300

GSGKTTAAKPIYNQIHHKFQFKSFLANVSEYDLVDLQGKLVSDILKQTGSKVTSVDGGISLIKNHLQRRSVLVIIDNVDKVEQLNAIAGNRDWFGPGSRIIITTRDERLLKQVNMKVDKTYPL

superfamily: SSF52540
1-167 SSF52540

GSGKTTAAKPIYNQIHHKFQFKSFLANVSEYDLVDLQGKLVSDILKQTGSKVTSVDGGISLIKNHLQRRSVLVIIDNVDKVEQLNAIAGNRDWFGPGSRIIITTRDERLLKQVNMKVDKTYPLKEMNEEEALKLFSLHAFGNGCPDKGYLELSKEVVSYCGGLPLAL

HMMPanther: PTHR11017
3-167 PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

GKTTAAKPIYNQIHHKFQFKSFLANVSEYDLVDLQGKLVSDILKQTGSKVTSVDGGISLIKNHLQRRSVLVIIDNVDKVEQLNAIAGNRDWFGPGSRIIITTRDERLLKQVNMKVDKTYPLKEMNEEEALKLFSLHAFGNGCPDKGYLELSKEVVSYCGGLPLAL

HMMPanther: PTHR11017:SF20
3-167 PTHR11017:SF20,SUBFAMILY NOT NAMED

GKTTAAKPIYNQIHHKFQFKSFLANVSEYDLVDLQGKLVSDILKQTGSKVTSVDGGISLIKNHLQRRSVLVIIDNVDKVEQLNAIAGNRDWFGPGSRIIITTRDERLLKQVNMKVDKTYPLKEMNEEEALKLFSLHAFGNGCPDKGYLELSKEVVSYCGGLPLAL






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Analyses

Blast

Blast matches against Reference R-Genes. Show


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