PRGDB00047924 (nucleotide binding site leucine-rich repeat disease resistance protein)

nucleotide binding site leucine-rich repeat disease resistance protein
Gene Type	Putative_R-Genes,_collected_from_NCBI_Protein
GenBank	209981165 (EU939846)
Gene Class	NL
Domain Type	NBS, LRR, Others
Gene Species	Pyrus sinkiangensis
	Comment?

Pyrus sinkiangensis clone Ps-Hxl-2 nucleotide binding site leucine-rich repeat disease resistance protein gene, partial cds.

DNA Sequence

GGTGTTGGTAAGACTACCATTGCCAAAACATATTATGAGAGGATTCTTCATAAATTTGAAGTCAAAAGCTTTCATGACAAAGTTAGAGAGGGTTCTAAGGCACACGGTCTGGCTGGTCTACAGAGGAAGCTTTCCAATAGCCTTATGAATAGAAATATACAAGACTGGTGTGACAGTGAAGCCGCCAGAATGAGAAGTTTCTTACTTCGAAAAAAGGTTCTCATCATTCTTGATGACGTGGACGATAGTAGTCAGTTAGAAAAGCTATGTGGAAGCCCAGCTTGGTTTGGTCAAGGGAGCAGAATCATTATTACGACTGCAGATGAACAGTTGCTAATTTCACATGGTGTAGAAAGAAGATTTAAGGTGACAGAGTTGAGTGATGTTGGCGCTCTTAAACTTTTTAGCTTGAGAGCCTTTAAAAGAGATAGTCCGCCTAAAAGTCATATGGATCTGTCTAAATGTTTTGTGAATTATGCCAATGGCCTTCCTTTAGCCCTC

Protein sequences

Name	Description	Sequence
nucleotide binding site leucine-rich repeat disease resistance protein	nucleotide binding site leucine-rich repeat disease resistance protein [Pyrus sinkiangensis].	GVGKTTIAKTYYERILHKFEVKSFHDKVREGSKAHGLAGLQRKLSNSLMNRNIQDWCDSEAARMRSFLLRKKVLIILDDVDDSSQLEKLCGSPAWFGQGSRIIITTADEQLLISHGVERRFKVTELSDVGALKLFSLRAFKRDSPPKSHMDLSKCFVNYANGLPLAL

Domains

Domain	Start-End	Description	Sequence
HMMPfam: PF00931 IPR002182	1-167	NB-ARC,NBS NB-ARC	GVGKTTIAKTYYERILHKFEVKSFHDKVREGSKAHGLAGLQRKLSNSLMNRNIQDWCDSEAARMRSFLLRKKVLIILDDVDDSSQLEKLCGSPAWFGQGSRIIITTADEQLLISHGVERRFKVTELSDVGALKLFSLRAFKRDSPPKSHMDLSKCFVNYANGLPLAL
HMMPanther: PTHR11017:SF20	1-167	PTHR11017:SF20,SUBFAMILY NOT NAMED	GVGKTTIAKTYYERILHKFEVKSFHDKVREGSKAHGLAGLQRKLSNSLMNRNIQDWCDSEAARMRSFLLRKKVLIILDDVDDSSQLEKLCGSPAWFGQGSRIIITTADEQLLISHGVERRFKVTELSDVGALKLFSLRAFKRDSPPKSHMDLSKCFVNYANGLPLAL
HMMPanther: PTHR11017	1-167	PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN	GVGKTTIAKTYYERILHKFEVKSFHDKVREGSKAHGLAGLQRKLSNSLMNRNIQDWCDSEAARMRSFLLRKKVLIILDDVDDSSQLEKLCGSPAWFGQGSRIIITTADEQLLISHGVERRFKVTELSDVGALKLFSLRAFKRDSPPKSHMDLSKCFVNYANGLPLAL
superfamily: SSF52540	1-167	SSF52540	GVGKTTIAKTYYERILHKFEVKSFHDKVREGSKAHGLAGLQRKLSNSLMNRNIQDWCDSEAARMRSFLLRKKVLIILDDVDDSSQLEKLCGSPAWFGQGSRIIITTADEQLLISHGVERRFKVTELSDVGALKLFSLRAFKRDSPPKSHMDLSKCFVNYANGLPLAL
FPrintScan: PR00364 IPR000767	67-81	DISEASERSIST Disease resistance protein	FLLRKKVLIILDDVD
FPrintScan: PR00364 IPR000767	160-167	DISEASERSIST Disease resistance protein	ANGLPLAL

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Analyses

Blast

Blast matches against Reference R-Genes. Show