PRGDB00047924 (nucleotide binding site leucine-rich repeat disease resistance protein)

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nucleotide binding site leucine-rich repeat disease resistance protein
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 209981165 (EU939846)
Gene Class NL
Domain Type NBS, LRR, Others
Gene Species Pyrus sinkiangensis

Comment?

Pyrus sinkiangensis clone Ps-Hxl-2 nucleotide binding site leucine-rich repeat disease resistance protein gene, partial cds.

DNA Sequence

GGTGTTGGTAAGACTACCATTGCCAAAACATATTATGAGAGGATTCTTCATAAATTTGAAGTCAAAAGCTTTCATGACAAAGTTAGAGAGGGTTCTAAGGCACACGGTCTGGCTGGTCTACAGAGGAAGCTTTCCAATAGCCTTATGAATAGAAATATACAAGACTGGTGTGACAGTGAAGCCGCCAGAATGAGAAGTTTCTTACTTCGAAAAAAGGTTCTCATCATTCTTGATGACGTGGACGATAGTAGTCAGTTAGAAAAGCTATGTGGAAGCCCAGCTTGGTTTGGTCAAGGGAGCAGAATCATTATTACGACTGCAGATGAACAGTTGCTAATTTCACATGGTGTAGAAAGAAGATTTAAGGTGACAGAGTTGAGTGATGTTGGCGCTCTTAAACTTTTTAGCTTGAGAGCCTTTAAAAGAGATAGTCCGCCTAAAAGTCATATGGATCTGTCTAAATGTTTTGTGAATTATGCCAATGGCCTTCCTTTAGCCCTC


Protein sequences

Name Description Sequence
nucleotide binding site leucine-rich repeat disease resistance protein nucleotide binding site leucine-rich repeat disease resistance protein [Pyrus sinkiangensis].

GVGKTTIAKTYYERILHKFEVKSFHDKVREGSKAHGLAGLQRKLSNSLMNRNIQDWCDSEAARMRSFLLRKKVLIILDDVDDSSQLEKLCGSPAWFGQGSRIIITTADEQLLISHGVERRFKVTELSDVGALKLFSLRAFKRDSPPKSHMDLSKCFVNYANGLPLAL

Domains

Domain Start-End Description Sequence

HMMPfam: PF00931
IPR002182
1-167 NB-ARC,NBS
NB-ARC

GVGKTTIAKTYYERILHKFEVKSFHDKVREGSKAHGLAGLQRKLSNSLMNRNIQDWCDSEAARMRSFLLRKKVLIILDDVDDSSQLEKLCGSPAWFGQGSRIIITTADEQLLISHGVERRFKVTELSDVGALKLFSLRAFKRDSPPKSHMDLSKCFVNYANGLPLAL

HMMPanther: PTHR11017:SF20
1-167 PTHR11017:SF20,SUBFAMILY NOT NAMED

GVGKTTIAKTYYERILHKFEVKSFHDKVREGSKAHGLAGLQRKLSNSLMNRNIQDWCDSEAARMRSFLLRKKVLIILDDVDDSSQLEKLCGSPAWFGQGSRIIITTADEQLLISHGVERRFKVTELSDVGALKLFSLRAFKRDSPPKSHMDLSKCFVNYANGLPLAL

HMMPanther: PTHR11017
1-167 PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

GVGKTTIAKTYYERILHKFEVKSFHDKVREGSKAHGLAGLQRKLSNSLMNRNIQDWCDSEAARMRSFLLRKKVLIILDDVDDSSQLEKLCGSPAWFGQGSRIIITTADEQLLISHGVERRFKVTELSDVGALKLFSLRAFKRDSPPKSHMDLSKCFVNYANGLPLAL

superfamily: SSF52540
1-167 SSF52540

GVGKTTIAKTYYERILHKFEVKSFHDKVREGSKAHGLAGLQRKLSNSLMNRNIQDWCDSEAARMRSFLLRKKVLIILDDVDDSSQLEKLCGSPAWFGQGSRIIITTADEQLLISHGVERRFKVTELSDVGALKLFSLRAFKRDSPPKSHMDLSKCFVNYANGLPLAL

FPrintScan: PR00364
IPR000767
67-81 DISEASERSIST
Disease resistance protein

FLLRKKVLIILDDVD

FPrintScan: PR00364
IPR000767
160-167 DISEASERSIST
Disease resistance protein

ANGLPLAL






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Analyses

Blast

Blast matches against Reference R-Genes. Show


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