PRGDB00047933 (nucleotide binding site leucine-rich repeat disease resistance protein)

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nucleotide binding site leucine-rich repeat disease resistance protein
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 209981147 (EU939837)
Gene Class NL
Domain Type NBS, LRR, Others
Gene Species Pyrus sinkiangensis

Comment?

Pyrus sinkiangensis clone Ps-Hjjl-1 nucleotide binding site leucine-rich repeat disease resistance protein gene, partial cds.

DNA Sequence

GGTGTTGGTAAGACTACCCTTGCTGAAACTATATTTCACAAACTCTCTTCTAAATTCGAAGCTTCTTGTTTTGTTAAGAATGTTAGGGAGAACTCAGAAAAAGCAGATGGACTACATCACTTGGAAACAACACTTCTTAAGGAGATATTAAAGGAAGATGATCTATCCATGGGATCAACTAGTGTTCGAAAAAGGCTCAGCCGCACAAAGGTCCTCATTGTTCTTGATGATGTGAGTAGATCAATGCAAATAGAACGTTTAGCTGGAGATCGTCTTCGGTATGGCACTGGAAGTAGAATCCTTATCACAACTAGAGATAGGGGCACACTTGGGCAAACTGTTGAAGAGGATGATATCTACGAGGTTGAGGTGCTAAAACCGGATGACGCTCTTCAGCTCTTCTGTTCGCGTGCTTTAAAGAATAACAGTACGCGTATAACAGATTGTAAGGAGTTGGTAGAAAAGGCGGTGGCTTATGCCAAAGGCCTTCCTTTAGCCCTC


Protein sequences

Name Description Sequence
nucleotide binding site leucine-rich repeat disease resistance protein nucleotide binding site leucine-rich repeat disease resistance protein [Pyrus sinkiangensis].

GVGKTTLAETIFHKLSSKFEASCFVKNVRENSEKADGLHHLETTLLKEILKEDDLSMGSTSVRKRLSRTKVLIVLDDVSRSMQIERLAGDRLRYGTGSRILITTRDRGTLGQTVEEDDIYEVEVLKPDDALQLFCSRALKNNSTRITDCKELVEKAVAYAKGLPLAL

Domains

Domain Start-End Description Sequence

HMMPanther: PTHR11017
1-167 PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

GVGKTTLAETIFHKLSSKFEASCFVKNVRENSEKADGLHHLETTLLKEILKEDDLSMGSTSVRKRLSRTKVLIVLDDVSRSMQIERLAGDRLRYGTGSRILITTRDRGTLGQTVEEDDIYEVEVLKPDDALQLFCSRALKNNSTRITDCKELVEKAVAYAKGLPLAL

HMMPfam: PF00931
IPR002182
1-167 NB-ARC,NBS
NB-ARC

GVGKTTLAETIFHKLSSKFEASCFVKNVRENSEKADGLHHLETTLLKEILKEDDLSMGSTSVRKRLSRTKVLIVLDDVSRSMQIERLAGDRLRYGTGSRILITTRDRGTLGQTVEEDDIYEVEVLKPDDALQLFCSRALKNNSTRITDCKELVEKAVAYAKGLPLAL

Gene3D: G3DSA:3.40.50.300
1-80 G3DSA:3.40.50.300

GVGKTTLAETIFHKLSSKFEASCFVKNVRENSEKADGLHHLETTLLKEILKEDDLSMGSTSVRKRLSRTKVLIVLDDVSR

HMMPanther: PTHR11017:SF20
1-167 PTHR11017:SF20,SUBFAMILY NOT NAMED

GVGKTTLAETIFHKLSSKFEASCFVKNVRENSEKADGLHHLETTLLKEILKEDDLSMGSTSVRKRLSRTKVLIVLDDVSRSMQIERLAGDRLRYGTGSRILITTRDRGTLGQTVEEDDIYEVEVLKPDDALQLFCSRALKNNSTRITDCKELVEKAVAYAKGLPLAL

superfamily: SSF52540
1-167 SSF52540

GVGKTTLAETIFHKLSSKFEASCFVKNVRENSEKADGLHHLETTLLKEILKEDDLSMGSTSVRKRLSRTKVLIVLDDVSRSMQIERLAGDRLRYGTGSRILITTRDRGTLGQTVEEDDIYEVEVLKPDDALQLFCSRALKNNSTRITDCKELVEKAVAYAKGLPLAL

FPrintScan: PR00364
IPR000767
65-79 DISEASERSIST
Disease resistance protein

RLSRTKVLIVLDDVS

FPrintScan: PR00364
IPR000767
160-167 DISEASERSIST
Disease resistance protein

AKGLPLAL






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Analyses

Blast

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