PRGDB00047934 (nucleotide binding site leucine-rich repeat disease resistance protein)

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nucleotide binding site leucine-rich repeat disease resistance protein
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 209981145 (EU939836)
Gene Class NL
Domain Type NBS, LRR
Gene Species Pyrus sinkiangensis

Comment?

Pyrus sinkiangensis clone Ps-Aksjjl-1 nucleotide binding site leucine-rich repeat disease resistance protein gene, partial cds.

DNA Sequence

GGTGTTGGTAAGACTACCCTTGCTGAAACTATATTTCACAAACTCTCTTCTAAATTCGAAGCTTCTTGTTTTGTTAAGAATGTTAGGGAGAACTCAGAAAAAGCAGGTGGACTAGATCACTTGGAAACAACACTTCTTAAGGAAATATTAAAGGAAGAAGGTCTATCCATACGACCAACTATTGTTCAAAAAAGGCTCAGATGCACAAAGGTCCTCATTGTTCTTGATGGTGTGAGTAGTTCAATGCAAATTGAACTTTTAGCTGGAGATCCTCCTTGGTATGGCACTGGAAGTATAATCATTATCACAACTAGAGATAGGGGCACACTTGGGAAAACTGTTAAAGAGGATAATATCTACGAGGTTGAGGTACTAAAACCGGATGACGCTCTTCAACTCTTCTGTTTGTGTGCTTTCAAGAATAACAGTACGCGTATAATAGATTGTAAGGAGTTGGCAGAAAAGGCGGTGGATTATGCCCAAGGCCTTCCTTTAGCCCTC


Protein sequences

Name Description Sequence
nucleotide binding site leucine-rich repeat disease resistance protein nucleotide binding site leucine-rich repeat disease resistance protein [Pyrus sinkiangensis].

GVGKTTLAETIFHKLSSKFEASCFVKNVRENSEKAGGLDHLETTLLKEILKEEGLSIRPTIVQKRLRCTKVLIVLDGVSSSMQIELLAGDPPWYGTGSIIIITTRDRGTLGKTVKEDNIYEVEVLKPDDALQLFCLCAFKNNSTRIIDCKELAEKAVDYAQGLPLAL


Domains

Domain Start-End Description Sequence

HMMPfam: PF00931
IPR002182
1-167 NB-ARC,NBS
NB-ARC

GVGKTTLAETIFHKLSSKFEASCFVKNVRENSEKAGGLDHLETTLLKEILKEEGLSIRPTIVQKRLRCTKVLIVLDGVSSSMQIELLAGDPPWYGTGSIIIITTRDRGTLGKTVKEDNIYEVEVLKPDDALQLFCLCAFKNNSTRIIDCKELAEKAVDYAQGLPLAL

HMMPanther: PTHR11017:SF20
1-167 PTHR11017:SF20,SUBFAMILY NOT NAMED

GVGKTTLAETIFHKLSSKFEASCFVKNVRENSEKAGGLDHLETTLLKEILKEEGLSIRPTIVQKRLRCTKVLIVLDGVSSSMQIELLAGDPPWYGTGSIIIITTRDRGTLGKTVKEDNIYEVEVLKPDDALQLFCLCAFKNNSTRIIDCKELAEKAVDYAQGLPLAL

HMMPanther: PTHR11017
1-167 PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

GVGKTTLAETIFHKLSSKFEASCFVKNVRENSEKAGGLDHLETTLLKEILKEEGLSIRPTIVQKRLRCTKVLIVLDGVSSSMQIELLAGDPPWYGTGSIIIITTRDRGTLGKTVKEDNIYEVEVLKPDDALQLFCLCAFKNNSTRIIDCKELAEKAVDYAQGLPLAL

superfamily: SSF52540
1-167 SSF52540

GVGKTTLAETIFHKLSSKFEASCFVKNVRENSEKAGGLDHLETTLLKEILKEEGLSIRPTIVQKRLRCTKVLIVLDGVSSSMQIELLAGDPPWYGTGSIIIITTRDRGTLGKTVKEDNIYEVEVLKPDDALQLFCLCAFKNNSTRIIDCKELAEKAVDYAQGLPLAL






List of Contributions

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Analyses

Blast

Blast matches against Reference R-Genes. Show


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