PRGDB00047937 (nucleotide binding site leucine-rich repeat disease resistance protein)

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nucleotide binding site leucine-rich repeat disease resistance protein
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 209981139 (EU939833)
Gene Class NL
Domain Type NBS, LRR
Gene Species Pyrus pyrifolia

Comment?

Pyrus pyrifolia clone Pp-Yh-4 nucleotide binding site leucine-rich repeat disease resistance protein gene, partial cds.

DNA Sequence

GGATCTGGTAAAACAACAGTTGCCAAAGCCATTTATAACCATGTTTATCATAAATTTGAATTCAAAAGTTTCCTTACCGACGTTAGTGACACTGTAAATAAACATGGTATGGTTCACTTGCAAGAAAAACTTATTTTTGACATCTTGAAAAGGAAGTCTCAAATAAGTAGTGTTGATGGAGGTATCAGTCTGATAAAACAACATTTTCAACATAGAAGGGTACTTGTCATCATCGACAACATAGATGAAGTGGAACAACTAAATGCAATAGCTGGAAATCATGATTGGTTTGGTCCAGGAAGTAGAATTATCATAACGACACGAGATGAACATTTGCTAAAGCAAGTGGATAAGACATATCCGGCTCAGAAATTGAATAAAGGAGAAGCTCTGGAGCTCCTTAGTTGGCATGCATTTGGAAATAGTTATCCGAATGAAGGATATCTTGAACTCTCACAAAAGGTTGTTTCTTACTGTGGAGGATTACCCTTAGCCCT


Protein sequences

Name Description Sequence
nucleotide binding site leucine-rich repeat disease resistance protein nucleotide binding site leucine-rich repeat disease resistance protein [Pyrus pyrifolia].

GSGKTTVAKAIYNHVYHKFEFKSFLTDVSDTVNKHGMVHLQEKLIFDILKRKSQISSVDGGISLIKQHFQHRRVLVIIDNIDEVEQLNAIAGNHDWFGPGSRIIITTRDEHLLKQVDKTYPAQKLNKGEALELLSWHAFGNSYPNEGYLELSQKVVSYCGGLPLAL


Domains

Domain Start-End Description Sequence

Gene3D: G3DSA:3.40.50.300
1-118 G3DSA:3.40.50.300

GSGKTTVAKAIYNHVYHKFEFKSFLTDVSDTVNKHGMVHLQEKLIFDILKRKSQISSVDGGISLIKQHFQHRRVLVIIDNIDEVEQLNAIAGNHDWFGPGSRIIITTRDEHLLKQVDK

superfamily: SSF52540
1-166 SSF52540

GSGKTTVAKAIYNHVYHKFEFKSFLTDVSDTVNKHGMVHLQEKLIFDILKRKSQISSVDGGISLIKQHFQHRRVLVIIDNIDEVEQLNAIAGNHDWFGPGSRIIITTRDEHLLKQVDKTYPAQKLNKGEALELLSWHAFGNSYPNEGYLELSQKVVSYCGGLPLAL

HMMPfam: PF00931
IPR002182
1-166 NB-ARC,NBS
NB-ARC

GSGKTTVAKAIYNHVYHKFEFKSFLTDVSDTVNKHGMVHLQEKLIFDILKRKSQISSVDGGISLIKQHFQHRRVLVIIDNIDEVEQLNAIAGNHDWFGPGSRIIITTRDEHLLKQVDKTYPAQKLNKGEALELLSWHAFGNSYPNEGYLELSQKVVSYCGGLPLAL

HMMPanther: PTHR11017
3-166 PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

GKTTVAKAIYNHVYHKFEFKSFLTDVSDTVNKHGMVHLQEKLIFDILKRKSQISSVDGGISLIKQHFQHRRVLVIIDNIDEVEQLNAIAGNHDWFGPGSRIIITTRDEHLLKQVDKTYPAQKLNKGEALELLSWHAFGNSYPNEGYLELSQKVVSYCGGLPLAL

HMMPanther: PTHR11017:SF20
3-166 PTHR11017:SF20,SUBFAMILY NOT NAMED

GKTTVAKAIYNHVYHKFEFKSFLTDVSDTVNKHGMVHLQEKLIFDILKRKSQISSVDGGISLIKQHFQHRRVLVIIDNIDEVEQLNAIAGNHDWFGPGSRIIITTRDEHLLKQVDKTYPAQKLNKGEALELLSWHAFGNSYPNEGYLELSQKVVSYCGGLPLAL






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Analyses

Blast

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