PRGDB00047944 (nucleotide binding site leucine-rich repeat disease resistance protein)

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nucleotide binding site leucine-rich repeat disease resistance protein
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 209981125 (EU939826)
Gene Class TNL
Domain Type NBS, LRR, TIR, Others
Gene Species Pyrus pyrifolia

Comment?

Pyrus pyrifolia clone Pp-Wshhxl-3 nucleotide binding site leucine-rich repeat disease resistance protein gene, partial cds.

DNA Sequence

GGATCCGGTAAAACAACGGTTGCAAAAGTAATTTTCAACAAATATCAGCACTTGTTTGATGCTACAAGTTTTCTTCCAAATGTGAGAAAAGATGAGGAACTGGTTGATTCACAAAACAAACTTCTTTCTGATATCTTGAGATCGGGAAACATGAAGGTTAGTAGGATCTATGAAGGGACCACGGAGATTAAAAGAAGACTCGGCAACAAAAGAGTATTTGTTATAGTAGATGACGTAGACCGCGATGCACAGTTAGATGCATTAGCTCTAAGGCATGACTCATTTGGCCCAGGAAGTAGAATTATTGTAACAACAAGGGATCAACATTTGCTAAAGATACTTAACGTGGAGGCGATATGTCCTTTGCAAGAAATGAATAAAGAAGAAGCTCTTGAGCTATTTAGTTGGCATGCCTTCAGAAAGAATTATCCTAATGAAGAGTACGTTGAGCTCTCAAGAGAAGCTGTTGACTACTGTGGGGGTTTGCCATTAGCCCT


Protein sequences

Name Description Sequence
nucleotide binding site leucine-rich repeat disease resistance protein nucleotide binding site leucine-rich repeat disease resistance protein [Pyrus pyrifolia].

GSGKTTVAKVIFNKYQHLFDATSFLPNVRKDEELVDSQNKLLSDILRSGNMKVSRIYEGTTEIKRRLGNKRVFVIVDDVDRDAQLDALALRHDSFGPGSRIIVTTRDQHLLKILNVEAICPLQEMNKEEALELFSWHAFRKNYPNEEYVELSREAVDYCGGLPLAL

Domains

Domain Start-End Description Sequence

HMMPanther: PTHR11017
1-166 PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

GSGKTTVAKVIFNKYQHLFDATSFLPNVRKDEELVDSQNKLLSDILRSGNMKVSRIYEGTTEIKRRLGNKRVFVIVDDVDRDAQLDALALRHDSFGPGSRIIVTTRDQHLLKILNVEAICPLQEMNKEEALELFSWHAFRKNYPNEEYVELSREAVDYCGGLPLAL

Gene3D: G3DSA:3.40.50.300
1-112 G3DSA:3.40.50.300

GSGKTTVAKVIFNKYQHLFDATSFLPNVRKDEELVDSQNKLLSDILRSGNMKVSRIYEGTTEIKRRLGNKRVFVIVDDVDRDAQLDALALRHDSFGPGSRIIVTTRDQHLLK

HMMPfam: PF00931
IPR002182
1-166 NB-ARC,NBS
NB-ARC

GSGKTTVAKVIFNKYQHLFDATSFLPNVRKDEELVDSQNKLLSDILRSGNMKVSRIYEGTTEIKRRLGNKRVFVIVDDVDRDAQLDALALRHDSFGPGSRIIVTTRDQHLLKILNVEAICPLQEMNKEEALELFSWHAFRKNYPNEEYVELSREAVDYCGGLPLAL

superfamily: SSF52540
1-166 SSF52540

GSGKTTVAKVIFNKYQHLFDATSFLPNVRKDEELVDSQNKLLSDILRSGNMKVSRIYEGTTEIKRRLGNKRVFVIVDDVDRDAQLDALALRHDSFGPGSRIIVTTRDQHLLKILNVEAICPLQEMNKEEALELFSWHAFRKNYPNEEYVELSREAVDYCGGLPLAL

HMMPanther: PTHR11017:SF130
1-166 PTHR11017:SF130,DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS)

GSGKTTVAKVIFNKYQHLFDATSFLPNVRKDEELVDSQNKLLSDILRSGNMKVSRIYEGTTEIKRRLGNKRVFVIVDDVDRDAQLDALALRHDSFGPGSRIIVTTRDQHLLKILNVEAICPLQEMNKEEALELFSWHAFRKNYPNEEYVELSREAVDYCGGLPLAL

FPrintScan: PR00364
IPR000767
66-80 DISEASERSIST
Disease resistance protein

RLGNKRVFVIVDDVD

FPrintScan: PR00364
IPR000767
159-166 DISEASERSIST
Disease resistance protein

CGGLPLAL






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