PRGDB00047947 (nucleotide binding site leucine-rich repeat disease resistance protein)

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nucleotide binding site leucine-rich repeat disease resistance protein
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 209981119 (EU939823)
Gene Class TNL
Domain Type NBS, LRR, TIR
Gene Species Pyrus pyrifolia

Comment?

Pyrus pyrifolia clone Pp-Qh-8 nucleotide binding site leucine-rich repeat disease resistance protein gene, partial cds.

DNA Sequence

GGGTCCGGAAAAACGACGGTTGCCAAAGCCATTTTCAACAAATATCAGGATTTGTTTGTAGGTAAAAGTTTTCTTGCTAGTGTGAGAGAAGAGAAACTGGTTAAGTCGCAAAACACACTTCTTTCTGATGTATTGAGATCAGGAAACATAAAGGTTAGTAGAATTGATGAAGGGACCGAGGATATAAAAAGAAGACTTGGCAACCAAATGGTATTTGTCATAGTTGATGAGGTAGATAGCGTGAAACAGTTAGAAGCATTAGCTATAAAACGTGACTCTTTCGGCCCAGGTAGTAGAATTATTATAACCTCAAGAGACCAACATTTGCTAAAGATACTAAAAGCGAATACGATATGTCATCTACCAGCAATGAATAAAGAAGAAGCTCTTGAGCTCCTTAGTTGGCATGCCTTCGGTAATAATTATCATAATAAAGAATATCTTCATGTCTCAAGAGAAGTTGTTGATTACTGTGGAGGTTTGCCCTTAGCACT


Protein sequences

Name Description Sequence
nucleotide binding site leucine-rich repeat disease resistance protein nucleotide binding site leucine-rich repeat disease resistance protein [Pyrus pyrifolia].

GSGKTTVAKAIFNKYQDLFVGKSFLASVREEKLVKSQNTLLSDVLRSGNIKVSRIDEGTEDIKRRLGNQMVFVIVDEVDSVKQLEALAIKRDSFGPGSRIIITSRDQHLLKILKANTICHLPAMNKEEALELLSWHAFGNNYHNKEYLHVSREVVDYCGGLPLAL


Domains

Domain Start-End Description Sequence

superfamily: SSF52540
1-165 SSF52540

GSGKTTVAKAIFNKYQDLFVGKSFLASVREEKLVKSQNTLLSDVLRSGNIKVSRIDEGTEDIKRRLGNQMVFVIVDEVDSVKQLEALAIKRDSFGPGSRIIITSRDQHLLKILKANTICHLPAMNKEEALELLSWHAFGNNYHNKEYLHVSREVVDYCGGLPLAL

HMMPanther: PTHR11017:SF130
1-165 PTHR11017:SF130,DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS)

GSGKTTVAKAIFNKYQDLFVGKSFLASVREEKLVKSQNTLLSDVLRSGNIKVSRIDEGTEDIKRRLGNQMVFVIVDEVDSVKQLEALAIKRDSFGPGSRIIITSRDQHLLKILKANTICHLPAMNKEEALELLSWHAFGNNYHNKEYLHVSREVVDYCGGLPLAL

HMMPanther: PTHR11017
1-165 PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

GSGKTTVAKAIFNKYQDLFVGKSFLASVREEKLVKSQNTLLSDVLRSGNIKVSRIDEGTEDIKRRLGNQMVFVIVDEVDSVKQLEALAIKRDSFGPGSRIIITSRDQHLLKILKANTICHLPAMNKEEALELLSWHAFGNNYHNKEYLHVSREVVDYCGGLPLAL

Gene3D: G3DSA:3.40.50.300
1-141 G3DSA:3.40.50.300

GSGKTTVAKAIFNKYQDLFVGKSFLASVREEKLVKSQNTLLSDVLRSGNIKVSRIDEGTEDIKRRLGNQMVFVIVDEVDSVKQLEALAIKRDSFGPGSRIIITSRDQHLLKILKANTICHLPAMNKEEALELLSWHAFGNN

HMMPfam: PF00931
IPR002182
1-165 NB-ARC,NBS
NB-ARC

GSGKTTVAKAIFNKYQDLFVGKSFLASVREEKLVKSQNTLLSDVLRSGNIKVSRIDEGTEDIKRRLGNQMVFVIVDEVDSVKQLEALAIKRDSFGPGSRIIITSRDQHLLKILKANTICHLPAMNKEEALELLSWHAFGNNYHNKEYLHVSREVVDYCGGLPLAL






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Analyses

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