PRGDB00047949 (nucleotide binding site leucine-rich repeat disease resistance protein)

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nucleotide binding site leucine-rich repeat disease resistance protein
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 209981115 (EU939821)
Gene Class NL
Domain Type NBS, LRR, Others
Gene Species Pyrus pyrifolia

Comment?

Pyrus pyrifolia clone Pp-Qh-6 nucleotide binding site leucine-rich repeat disease resistance protein gene, partial cds.

DNA Sequence

GGATCAGGTAAAACAACAGCTGCCAACGCCATATATAACAAAATTCATCACAAGTTCCAGTTCAAAAGTTTCCTCGCCGACGTTCGCGATACTGCAAGTAAATATGGTCTGGTTAATGTGCAAGAAAAACTTGTTTCTGACATCTTGCAAGAACCCACCAAGTTCCAAATAAACAATGTCAATGCAGGGATCAGTGTAATAAAACAACATCTTCGACGTAGAAAGGTACTTCTTGTTATCGATAATATCGATAAAATGGACCAACTAAATACAATAGCTGGAAATCATGATTGGTTTGGACCAGGAAGTAGAATTATCATAACAACAAGAGATGAACATTTATTAAAGCGAGCAGACAAGACATTTTTGGCTCAGAAAATGAATGAAGAAGAAGCTCTTGAGCTCTTTAGTTGGCATGCCTTTGAAAATAGTTATCCTCATGAAGGATATCTTAAACTCTCAAAAAAGGTTGTTTCTTATTGTGGAGGATTGCCCTTAGCTCT


Protein sequences

Name Description Sequence
nucleotide binding site leucine-rich repeat disease resistance protein nucleotide binding site leucine-rich repeat disease resistance protein [Pyrus pyrifolia].

GSGKTTAANAIYNKIHHKFQFKSFLADVRDTASKYGLVNVQEKLVSDILQEPTKFQINNVNAGISVIKQHLRRRKVLLVIDNIDKMDQLNTIAGNHDWFGPGSRIIITTRDEHLLKRADKTFLAQKMNEEEALELFSWHAFENSYPHEGYLKLSKKVVSYCGGLPLAL

Domains

Domain Start-End Description Sequence

superfamily: SSF52540
1-168 SSF52540

GSGKTTAANAIYNKIHHKFQFKSFLADVRDTASKYGLVNVQEKLVSDILQEPTKFQINNVNAGISVIKQHLRRRKVLLVIDNIDKMDQLNTIAGNHDWFGPGSRIIITTRDEHLLKRADKTFLAQKMNEEEALELFSWHAFENSYPHEGYLKLSKKVVSYCGGLPLAL

Gene3D: G3DSA:3.40.50.300
1-121 G3DSA:3.40.50.300

GSGKTTAANAIYNKIHHKFQFKSFLADVRDTASKYGLVNVQEKLVSDILQEPTKFQINNVNAGISVIKQHLRRRKVLLVIDNIDKMDQLNTIAGNHDWFGPGSRIIITTRDEHLLKRADKT

HMMPfam: PF00931
IPR002182
1-168 NB-ARC,NBS
NB-ARC

GSGKTTAANAIYNKIHHKFQFKSFLADVRDTASKYGLVNVQEKLVSDILQEPTKFQINNVNAGISVIKQHLRRRKVLLVIDNIDKMDQLNTIAGNHDWFGPGSRIIITTRDEHLLKRADKTFLAQKMNEEEALELFSWHAFENSYPHEGYLKLSKKVVSYCGGLPLAL

HMMPanther: PTHR11017
3-168 PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

GKTTAANAIYNKIHHKFQFKSFLADVRDTASKYGLVNVQEKLVSDILQEPTKFQINNVNAGISVIKQHLRRRKVLLVIDNIDKMDQLNTIAGNHDWFGPGSRIIITTRDEHLLKRADKTFLAQKMNEEEALELFSWHAFENSYPHEGYLKLSKKVVSYCGGLPLAL

HMMPanther: PTHR11017:SF20
3-168 PTHR11017:SF20,SUBFAMILY NOT NAMED

GKTTAANAIYNKIHHKFQFKSFLADVRDTASKYGLVNVQEKLVSDILQEPTKFQINNVNAGISVIKQHLRRRKVLLVIDNIDKMDQLNTIAGNHDWFGPGSRIIITTRDEHLLKRADKTFLAQKMNEEEALELFSWHAFENSYPHEGYLKLSKKVVSYCGGLPLAL

FPrintScan: PR00364
IPR000767
70-84 DISEASERSIST
Disease resistance protein

HLRRRKVLLVIDNID

FPrintScan: PR00364
IPR000767
161-168 DISEASERSIST
Disease resistance protein

CGGLPLAL






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