PRGDB00047950 (nucleotide binding site leucine-rich repeat disease resistance protein)

nucleotide binding site leucine-rich repeat disease resistance protein
Gene Type	Putative_R-Genes,_collected_from_NCBI_Protein
GenBank	209981113 (EU939820)
Gene Class	NL
Domain Type	NBS, LRR
Gene Species	Pyrus pyrifolia
	Comment?

Pyrus pyrifolia clone Pp-Qh-5 nucleotide binding site leucine-rich repeat disease resistance protein gene, partial cds.

DNA Sequence

GGATCTGGTAAAACAACATCTGCGAAAGCCATTTCTAACAAAATTCATCATAAGTTCCAGTTCAAATGTATCCTTGCCGACGTTCGCGACAATACAAGTAAACATGGTCTGGCTTATTTGCAAGAAAAACTTATTTTTGACATCTCGAAACAGAAGTCTGAAATAAGCAGTGTTGATAAAGGTATCAGTCTGATAGAAGATCAATTTTCACATAGAAAGGTACTTGTCATCATAGACAACATAGATGAAGTGGAACAACTGAATGCAATAGCTGGAAATCACAAATGGTTTGGTCCTGGAAGTAGAATTATCATAACGACACGAGATGAACATTTACTAAAGCAAGGGAAAGTGAACAAGACATATCCGGCTCAGGAATTGAATAAAGAAGAAGCTCTAGAGCTCTTGAGTTGGCATGCCTTTGGAAATCGACAGCCTAGCGAAGGATTTCTTGAACTCTCAGAAAAGTTTGTTTCTTACTGTGATGGTTTACCATTAGCCCT

Protein sequences

Name	Description	Sequence
nucleotide binding site leucine-rich repeat disease resistance protein	nucleotide binding site leucine-rich repeat disease resistance protein [Pyrus pyrifolia].	GSGKTTSAKAISNKIHHKFQFKCILADVRDNTSKHGLAYLQEKLIFDISKQKSEISSVDKGISLIEDQFSHRKVLVIIDNIDEVEQLNAIAGNHKWFGPGSRIIITTRDEHLLKQGKVNKTYPAQELNKEEALELLSWHAFGNRQPSEGFLELSEKFVSYCDGLPLAL

Domains

Domain	Start-End	Description	Sequence
superfamily: SSF52540	1-168	SSF52540	GSGKTTSAKAISNKIHHKFQFKCILADVRDNTSKHGLAYLQEKLIFDISKQKSEISSVDKGISLIEDQFSHRKVLVIIDNIDEVEQLNAIAGNHKWFGPGSRIIITTRDEHLLKQGKVNKTYPAQELNKEEALELLSWHAFGNRQPSEGFLELSEKFVSYCDGLPLAL
HMMPfam: PF00931 IPR002182	1-168	NB-ARC,NBS NB-ARC	GSGKTTSAKAISNKIHHKFQFKCILADVRDNTSKHGLAYLQEKLIFDISKQKSEISSVDKGISLIEDQFSHRKVLVIIDNIDEVEQLNAIAGNHKWFGPGSRIIITTRDEHLLKQGKVNKTYPAQELNKEEALELLSWHAFGNRQPSEGFLELSEKFVSYCDGLPLAL
Gene3D: G3DSA:3.40.50.300	1-115	G3DSA:3.40.50.300	GSGKTTSAKAISNKIHHKFQFKCILADVRDNTSKHGLAYLQEKLIFDISKQKSEISSVDKGISLIEDQFSHRKVLVIIDNIDEVEQLNAIAGNHKWFGPGSRIIITTRDEHLLKQ
HMMPanther: PTHR11017	3-168	PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN	GKTTSAKAISNKIHHKFQFKCILADVRDNTSKHGLAYLQEKLIFDISKQKSEISSVDKGISLIEDQFSHRKVLVIIDNIDEVEQLNAIAGNHKWFGPGSRIIITTRDEHLLKQGKVNKTYPAQELNKEEALELLSWHAFGNRQPSEGFLELSEKFVSYCDGLPLAL
HMMPanther: PTHR11017:SF20	3-168	PTHR11017:SF20,SUBFAMILY NOT NAMED	GKTTSAKAISNKIHHKFQFKCILADVRDNTSKHGLAYLQEKLIFDISKQKSEISSVDKGISLIEDQFSHRKVLVIIDNIDEVEQLNAIAGNHKWFGPGSRIIITTRDEHLLKQGKVNKTYPAQELNKEEALELLSWHAFGNRQPSEGFLELSEKFVSYCDGLPLAL

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Analyses

Blast

Blast matches against Reference R-Genes. Show