PRGDB00047952 (nucleotide binding site leucine-rich repeat disease resistance protein)

nucleotide binding site leucine-rich repeat disease resistance protein
Gene Type	Putative_R-Genes,_collected_from_NCBI_Protein
GenBank	209981109 (EU939818)
Gene Class	TNL
Domain Type	NBS, LRR, TIR, Others
Gene Species	Pyrus pyrifolia
	Comment?

Pyrus pyrifolia clone Pp-Qh-3 nucleotide binding site leucine-rich repeat disease resistance protein gene, partial cds.

DNA Sequence

GGATCCGGTAAAACAACAATTGCTAAAGCCATTTATAACCAATTTTGTGACAAGTTTGAAGGTAAGAGTTTCCTTGAAAACATGAGGGGAAAGAACCTAGTTAACTTGCAAAACCAACTTCTTTCTGATATCTTGCAAACTAAGACAAAAGTAAGCAGTATTGCCAAAGGGACCGCCTTGGTAGGGAAAAGATTTCGATGCTTAAGAGTACTTGTCATCTTGGATGATGTAGATGATTTGAAGCAACTAGACGAATTAGTTGTAAATCGCCACTCTTTTGGTCTGGGGAGCAGAATTATCATAACAACAAGAAATGAACATGTGTTAAATGAATTTGCAGTTGATGTGATATATCGGTCACAAGGAATGGAACGAGAAGAAGCTCTTGAGCTTTTTAGTTGGCATGCTTTCAGAAGTAGTTGTTGTCCTAGAAAATATCTGAACCTCGCAAGAGAAGTTGTCGATTACTGTGGAGGTTTGCCCTTAGCCCT

Protein sequences

Name	Description	Sequence
nucleotide binding site leucine-rich repeat disease resistance protein	nucleotide binding site leucine-rich repeat disease resistance protein [Pyrus pyrifolia].	GSGKTTIAKAIYNQFCDKFEGKSFLENMRGKNLVNLQNQLLSDILQTKTKVSSIAKGTALVGKRFRCLRVLVILDDVDDLKQLDELVVNRHSFGLGSRIIITTRNEHVLNEFAVDVIYRSQGMEREEALELFSWHAFRSSCCPRKYLNLAREVVDYCGGLPLAL

Domains

Domain	Start-End	Description	Sequence
HMMPanther: PTHR11017:SF130	1-164	PTHR11017:SF130,DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS)	GSGKTTIAKAIYNQFCDKFEGKSFLENMRGKNLVNLQNQLLSDILQTKTKVSSIAKGTALVGKRFRCLRVLVILDDVDDLKQLDELVVNRHSFGLGSRIIITTRNEHVLNEFAVDVIYRSQGMEREEALELFSWHAFRSSCCPRKYLNLAREVVDYCGGLPLAL
HMMPanther: PTHR11017	1-164	PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN	GSGKTTIAKAIYNQFCDKFEGKSFLENMRGKNLVNLQNQLLSDILQTKTKVSSIAKGTALVGKRFRCLRVLVILDDVDDLKQLDELVVNRHSFGLGSRIIITTRNEHVLNEFAVDVIYRSQGMEREEALELFSWHAFRSSCCPRKYLNLAREVVDYCGGLPLAL
HMMPfam: PF00931 IPR002182	1-164	NB-ARC,NBS NB-ARC	GSGKTTIAKAIYNQFCDKFEGKSFLENMRGKNLVNLQNQLLSDILQTKTKVSSIAKGTALVGKRFRCLRVLVILDDVDDLKQLDELVVNRHSFGLGSRIIITTRNEHVLNEFAVDVIYRSQGMEREEALELFSWHAFRSSCCPRKYLNLAREVVDYCGGLPLAL
Gene3D: G3DSA:3.40.50.300	1-106	G3DSA:3.40.50.300	GSGKTTIAKAIYNQFCDKFEGKSFLENMRGKNLVNLQNQLLSDILQTKTKVSSIAKGTALVGKRFRCLRVLVILDDVDDLKQLDELVVNRHSFGLGSRIIITTRNE
superfamily: SSF52540	1-164	SSF52540	GSGKTTIAKAIYNQFCDKFEGKSFLENMRGKNLVNLQNQLLSDILQTKTKVSSIAKGTALVGKRFRCLRVLVILDDVDDLKQLDELVVNRHSFGLGSRIIITTRNEHVLNEFAVDVIYRSQGMEREEALELFSWHAFRSSCCPRKYLNLAREVVDYCGGLPLAL
FPrintScan: PR00364 IPR000767	64-78	DISEASERSIST Disease resistance protein	RFRCLRVLVILDDVD
FPrintScan: PR00364 IPR000767	157-164	DISEASERSIST Disease resistance protein	CGGLPLAL

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Analyses

Blast

Blast matches against Reference R-Genes. Show