PRGDB00047953 (nucleotide binding site leucine-rich repeat disease resistance protein)

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nucleotide binding site leucine-rich repeat disease resistance protein
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 209981107 (EU939817)
Gene Class NL
Domain Type NBS, LRR, Others
Gene Species Pyrus pyrifolia

Comment?

Pyrus pyrifolia clone Pp-Qh-2 nucleotide binding site leucine-rich repeat disease resistance protein gene, partial cds.

DNA Sequence

GGATCCGGTAAAACGACAGCTGCCAAAGCCATCTATAACAAAATTCATCATGAGTTCCAATTCAAAAGCTTCCTTGACAACGTTAGTGAAAAAGATCTGGTTGTTTCGCAAAAAAAACTTGTTTCTGACATCTTGAAACAGACCAAGCTTGAGATAACCAGTGTTGATGAAGGTATCAGTCTGATAAAACATCATCTCCAAAGAAGAAGAGTACTTGTCATTATTGACAATGTAGACAAAGTGGAACAACTAAATGCAATAGCTGGAAATCGTGATTGGTTTGGCCCAGGAAGTGGAATTATCATAACGACACGAGATGAATGTTTACTAAAGCAAGTGAAAATGAAAGTGGACAAGACATATCCGCTTAAGGAAATGAATGAAGAAGAAGCTCTGAAACTCTTTAGTTGGCATGCCTTTGGAAGTAGTTGTCCTAATGAAGGATATCTTGAACTCTCAAAAGAGGTTGTTTCTTACTGTGGTGGTTTACCCTTAGCTCT


Protein sequences

Name Description Sequence
nucleotide binding site leucine-rich repeat disease resistance protein nucleotide binding site leucine-rich repeat disease resistance protein [Pyrus pyrifolia].

GSGKTTAAKAIYNKIHHEFQFKSFLDNVSEKDLVVSQKKLVSDILKQTKLEITSVDEGISLIKHHLQRRRVLVIIDNVDKVEQLNAIAGNRDWFGPGSGIIITTRDECLLKQVKMKVDKTYPLKEMNEEEALKLFSWHAFGSSCPNEGYLELSKEVVSYCGGLPLAL

Domains

Domain Start-End Description Sequence

HMMPfam: PF00931
IPR002182
1-167 NB-ARC,NBS
NB-ARC

GSGKTTAAKAIYNKIHHEFQFKSFLDNVSEKDLVVSQKKLVSDILKQTKLEITSVDEGISLIKHHLQRRRVLVIIDNVDKVEQLNAIAGNRDWFGPGSGIIITTRDECLLKQVKMKVDKTYPLKEMNEEEALKLFSWHAFGSSCPNEGYLELSKEVVSYCGGLPLAL

Gene3D: G3DSA:3.40.50.300
1-110 G3DSA:3.40.50.300

GSGKTTAAKAIYNKIHHEFQFKSFLDNVSEKDLVVSQKKLVSDILKQTKLEITSVDEGISLIKHHLQRRRVLVIIDNVDKVEQLNAIAGNRDWFGPGSGIIITTRDECLL

superfamily: SSF52540
1-167 SSF52540

GSGKTTAAKAIYNKIHHEFQFKSFLDNVSEKDLVVSQKKLVSDILKQTKLEITSVDEGISLIKHHLQRRRVLVIIDNVDKVEQLNAIAGNRDWFGPGSGIIITTRDECLLKQVKMKVDKTYPLKEMNEEEALKLFSWHAFGSSCPNEGYLELSKEVVSYCGGLPLAL

HMMPanther: PTHR11017
3-167 PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

GKTTAAKAIYNKIHHEFQFKSFLDNVSEKDLVVSQKKLVSDILKQTKLEITSVDEGISLIKHHLQRRRVLVIIDNVDKVEQLNAIAGNRDWFGPGSGIIITTRDECLLKQVKMKVDKTYPLKEMNEEEALKLFSWHAFGSSCPNEGYLELSKEVVSYCGGLPLAL

HMMPanther: PTHR11017:SF20
3-167 PTHR11017:SF20,SUBFAMILY NOT NAMED

GKTTAAKAIYNKIHHEFQFKSFLDNVSEKDLVVSQKKLVSDILKQTKLEITSVDEGISLIKHHLQRRRVLVIIDNVDKVEQLNAIAGNRDWFGPGSGIIITTRDECLLKQVKMKVDKTYPLKEMNEEEALKLFSWHAFGSSCPNEGYLELSKEVVSYCGGLPLAL

FPrintScan: PR00364
IPR000767
65-79 DISEASERSIST
Disease resistance protein

HLQRRRVLVIIDNVD

FPrintScan: PR00364
IPR000767
160-167 DISEASERSIST
Disease resistance protein

CGGLPLAL






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Analyses

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