PRGDB00047956 (nucleotide binding site leucine-rich repeat disease resistance protein)

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nucleotide binding site leucine-rich repeat disease resistance protein
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 209981101 (EU939814)
Gene Class NL
Domain Type NBS, LRR, Others
Gene Species Pyrus pyrifolia

Comment?

Pyrus pyrifolia clone Pp-PA22-6 nucleotide binding site leucine-rich repeat disease resistance protein gene, partial cds.

DNA Sequence

GGTGTTGGTAAGACTACTCTTGCTAAGCTAGCTTATGATAAAATCGTCCATCATTTTGAAGTTCACTGCATTCGTGAAAACGTTAGAGAGGTTTCTGTAACAGAGCGTACTCTAGTTCGTCTTCAAAAACAACTTCTTTGCGCAATCTTGAAAGAAAATATTGAAAACGTTAGAGACCAACAATGGGGAATCAATTACACGAAGAAATGCTTATGCAACAAAAAGGTTCTTCTTGTACTTGATGATGTGGATCAAATAAACCAGATACAAGTACTAGCTGGAAAGAAAGATTGGTTTGGCATGGGAAGTAGAATTATTATTATAACTAGAAATGAACGTCTGCTGGTCGAGCATGACATAATATTGTGTCATAATGTCGAGGTGTTGAATGATGCCGAAGCACTTGAGCTGTTTAGCCTGCACGCCCTTAGACGAGACCGACCTGAGGAAGATTTTTTGGAACTGTCTAAGCATTTCCTAGATTATGCTAGAGGCCTTCCTTTAGCCCTC


Protein sequences

Name Description Sequence
nucleotide binding site leucine-rich repeat disease resistance protein nucleotide binding site leucine-rich repeat disease resistance protein [Pyrus pyrifolia].

GVGKTTLAKLAYDKIVHHFEVHCIRENVREVSVTERTLVRLQKQLLCAILKENIENVRDQQWGINYTKKCLCNKKVLLVLDDVDQINQIQVLAGKKDWFGMGSRIIIITRNERLLVEHDIILCHNVEVLNDAEALELFSLHALRRDRPEEDFLELSKHFLDYARGLPLAL

Domains

Domain Start-End Description Sequence

HMMPanther: PTHR11017
1-170 PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

GVGKTTLAKLAYDKIVHHFEVHCIRENVREVSVTERTLVRLQKQLLCAILKENIENVRDQQWGINYTKKCLCNKKVLLVLDDVDQINQIQVLAGKKDWFGMGSRIIIITRNERLLVEHDIILCHNVEVLNDAEALELFSLHALRRDRPEEDFLELSKHFLDYARGLPLAL

HMMPfam: PF00931
IPR002182
1-170 NB-ARC,NBS
NB-ARC

GVGKTTLAKLAYDKIVHHFEVHCIRENVREVSVTERTLVRLQKQLLCAILKENIENVRDQQWGINYTKKCLCNKKVLLVLDDVDQINQIQVLAGKKDWFGMGSRIIIITRNERLLVEHDIILCHNVEVLNDAEALELFSLHALRRDRPEEDFLELSKHFLDYARGLPLAL

HMMPanther: PTHR11017:SF20
1-170 PTHR11017:SF20,SUBFAMILY NOT NAMED

GVGKTTLAKLAYDKIVHHFEVHCIRENVREVSVTERTLVRLQKQLLCAILKENIENVRDQQWGINYTKKCLCNKKVLLVLDDVDQINQIQVLAGKKDWFGMGSRIIIITRNERLLVEHDIILCHNVEVLNDAEALELFSLHALRRDRPEEDFLELSKHFLDYARGLPLAL

Gene3D: G3DSA:3.40.50.300
1-118 G3DSA:3.40.50.300

GVGKTTLAKLAYDKIVHHFEVHCIRENVREVSVTERTLVRLQKQLLCAILKENIENVRDQQWGINYTKKCLCNKKVLLVLDDVDQINQIQVLAGKKDWFGMGSRIIIITRNERLLVEH

superfamily: SSF52540
1-170 SSF52540

GVGKTTLAKLAYDKIVHHFEVHCIRENVREVSVTERTLVRLQKQLLCAILKENIENVRDQQWGINYTKKCLCNKKVLLVLDDVDQINQIQVLAGKKDWFGMGSRIIIITRNERLLVEHDIILCHNVEVLNDAEALELFSLHALRRDRPEEDFLELSKHFLDYARGLPLAL

FPrintScan: PR00364
IPR000767
70-84 DISEASERSIST
Disease resistance protein

CLCNKKVLLVLDDVD

FPrintScan: PR00364
IPR000767
163-170 DISEASERSIST
Disease resistance protein

ARGLPLAL






List of Contributions

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Analyses

Blast

Blast matches against Reference R-Genes. Show


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