PRGDB00047958 (nucleotide binding site leucine-rich repeat disease resistance protein)

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nucleotide binding site leucine-rich repeat disease resistance protein
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 209981097 (EU939812)
Gene Class NL
Domain Type NBS, LRR, Others
Gene Species Pyrus pyrifolia

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Pyrus pyrifolia clone Pp-PA22-4 nucleotide binding site leucine-rich repeat disease resistance protein gene, partial cds.

DNA Sequence

GGATCTGGTAAAACGACGGTTGCCAAAGCCATTTTCAACAAATATCACGATAAGTTTGTATGTAAAAGTTTTCTTGCTAATGTGAGAGAAAAGGAACTGGTCAATTCCCAAAACATGCTTCTTTATGATGTGTTGAGATTAAGAAACTTAAAGGTTAGTAAAGTTGATGAAGGGACCAAGGAGATAGAAGGAAGACTTAAGAATCTAAGGGTACTTGTCATAGTTGATGATGTAGACAGCCGGAAACAGTTAGAAGCATTAGCTATAAAACACGACTCATTTGGCCCAGGTAGTAGAATTATTGTAACCACAAGAGATAAACATTTGCTAAAGATAATAAAAGTGGATAGGAGGTGTGACCTACCAGCAATGAATGAAGAAGAAGCTCTTGAGCTCCTTAGTTGGCGTGCCTTTACTATGAATTGTCCTATGGAAGGGTATTTTCAACTCGCAAGAGAAGTTGTTGATTACTGTCAAGGTTTGCCATTAGCCCT


Protein sequences

Name Description Sequence
nucleotide binding site leucine-rich repeat disease resistance protein nucleotide binding site leucine-rich repeat disease resistance protein [Pyrus pyrifolia].

GSGKTTVAKAIFNKYHDKFVCKSFLANVREKELVNSQNMLLYDVLRLRNLKVSKVDEGTKEIEGRLKNLRVLVIVDDVDSRKQLEALAIKHDSFGPGSRIIVTTRDKHLLKIIKVDRRCDLPAMNEEEALELLSWRAFTMNCPMEGYFQLAREVVDYCQGLPLAL

Domains

Domain Start-End Description Sequence

Gene3D: G3DSA:3.40.50.300
1-134 G3DSA:3.40.50.300

GSGKTTVAKAIFNKYHDKFVCKSFLANVREKELVNSQNMLLYDVLRLRNLKVSKVDEGTKEIEGRLKNLRVLVIVDDVDSRKQLEALAIKHDSFGPGSRIIVTTRDKHLLKIIKVDRRCDLPAMNEEEALELLS

superfamily: SSF52540
1-165 SSF52540

GSGKTTVAKAIFNKYHDKFVCKSFLANVREKELVNSQNMLLYDVLRLRNLKVSKVDEGTKEIEGRLKNLRVLVIVDDVDSRKQLEALAIKHDSFGPGSRIIVTTRDKHLLKIIKVDRRCDLPAMNEEEALELLSWRAFTMNCPMEGYFQLAREVVDYCQGLPLAL

HMMPfam: PF00931
IPR002182
1-165 NB-ARC,NBS
NB-ARC

GSGKTTVAKAIFNKYHDKFVCKSFLANVREKELVNSQNMLLYDVLRLRNLKVSKVDEGTKEIEGRLKNLRVLVIVDDVDSRKQLEALAIKHDSFGPGSRIIVTTRDKHLLKIIKVDRRCDLPAMNEEEALELLSWRAFTMNCPMEGYFQLAREVVDYCQGLPLAL

HMMPanther: PTHR11017
3-165 PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

GKTTVAKAIFNKYHDKFVCKSFLANVREKELVNSQNMLLYDVLRLRNLKVSKVDEGTKEIEGRLKNLRVLVIVDDVDSRKQLEALAIKHDSFGPGSRIIVTTRDKHLLKIIKVDRRCDLPAMNEEEALELLSWRAFTMNCPMEGYFQLAREVVDYCQGLPLAL

HMMPanther: PTHR11017:SF20
3-165 PTHR11017:SF20,SUBFAMILY NOT NAMED

GKTTVAKAIFNKYHDKFVCKSFLANVREKELVNSQNMLLYDVLRLRNLKVSKVDEGTKEIEGRLKNLRVLVIVDDVDSRKQLEALAIKHDSFGPGSRIIVTTRDKHLLKIIKVDRRCDLPAMNEEEALELLSWRAFTMNCPMEGYFQLAREVVDYCQGLPLAL

FPrintScan: PR00364
IPR000767
65-79 DISEASERSIST
Disease resistance protein

RLKNLRVLVIVDDVD

FPrintScan: PR00364
IPR000767
158-165 DISEASERSIST
Disease resistance protein

CQGLPLAL






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