PRGDB00048024 (nbs)

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nbs
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 166084764 (AM931420)
Gene Class NL
Domain Type NBS, LRR
Gene Species Musa ornata

Comment?

Musa ornata partial nbs gene for truncated NBS-LRR disease resistance protein, clone N115_OR.

DNA Sequence

GGCATGGGGGGAGTTGGGAAGACCACTCTTGCTCAGCAAGCCTACAACCACGAGAGGGTGAAGGACTATTTTCATCATAAGGTCTGGGTCTGTGTATCCGACAACTTCAACGTGGAGAGGCTTACCAAAGAGATCATAGAATCCTTAACCCGAAAAAGGTGTGATCTCAATAACTTTGATACACTTCAAGTGGTTGTTAAGGAGGATTTGACCTCAAAAAGGTTCCTGCTTGTCCTCGACGATGTGTGGAACGAGGACAGCCTGAAATGA


Protein sequences

Name Description Sequence
truncated NBS-LRR disease resistance protein truncated NBS-LRR disease resistance protein [Musa ornata].

GMGGVGKTTLAQQAYNHERVKDYFHHKVWVCVSDNFNVERLTKEIIESLTRKRCDLNNFDTLQVVVKEDLTSKRFLLVLDDVWNEDSLK


Domains

Domain Start-End Description Sequence

HMMPfam: PF00931
IPR002182
1-88 NB-ARC,NBS
NB-ARC

GMGGVGKTTLAQQAYNHERVKDYFHHKVWVCVSDNFNVERLTKEIIESLTRKRCDLNNFDTLQVVVKEDLTSKRFLLVLDDVWNEDSL

superfamily: SSF52540
1-84 P-loop containing nucleoside triphosphate hydrolases

GMGGVGKTTLAQQAYNHERVKDYFHHKVWVCVSDNFNVERLTKEIIESLTRKRCDLNNFDTLQVVVKEDLTSKRFLLVLDDVWN

HMMPanther: PTHR23155:SF121
1-86 SUBFAMILY NOT NAMED,SUBFAMILY NOT NAMED

GMGGVGKTTLAQQAYNHERVKDYFHHKVWVCVSDNFNVERLTKEIIESLTRKRCDLNNFDTLQVVVKEDLTSKRFLLVLDDVWNED

HMMPanther: PTHR23155
1-86 FAMILY NOT NAMED,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

GMGGVGKTTLAQQAYNHERVKDYFHHKVWVCVSDNFNVERLTKEIIESLTRKRCDLNNFDTLQVVVKEDLTSKRFLLVLDDVWNED


List of References

M Azhar, J S Heslop-Harrison
Genomes, diversity and resistance gene analogues in Musa species.
Cytogenet. Genome Res.: 2008, 121(1);59-66
PubMed:18544928 WorldCat.org DOI (I p)





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Analyses

Blast

Blast matches against Reference R-Genes. Show


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