PRGDB00048025 (nbs)

nbs
Gene Type	Putative_R-Genes,_collected_from_NCBI_Protein
GenBank	166084762 (AM931419)
Gene Class	NL
Domain Type	NBS, LRR
Gene Species	Musa ornata
	Comment?

Musa ornata partial nbs gene for truncated NBS-LRR disease resistance protein, clone N112_OR.

DNA Sequence

GGAATGGGTGGGGTGGGGAAAACTACTCTGGCTCAGCAAGCCTACCACCACGAGAGGGTGAACAACTATTTTCAACCTAAGGTCTGGCTCTGTGTATCGGATAACTTCAACGTGGAGAGGCTTACCAAAGACATCGTAAAATTCATAACCGAGGAAAAGTGCGATATCTGCAACCTTGATAACACTTCAAGTGGTTGTTAA

Protein sequences

Name	Description	Sequence
truncated NBS-LRR disease resistance protein	truncated NBS-LRR disease resistance protein [Musa ornata].	GMGGVGKTTLAQQAYHHERVNNYFQPKVWLCVSDNFNVERLTKDIVKFITEEKCDICNLDNTSSGC

Domains

Domain	Start-End	Description	Sequence
HMMPanther: PTHR23155:SF121	1-55	PTHR23155:SF121,SUBFAMILY NOT NAMED	GMGGVGKTTLAQQAYHHERVNNYFQPKVWLCVSDNFNVERLTKDIVKFITEEKCD
HMMPanther: PTHR23155	1-55	PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN	GMGGVGKTTLAQQAYHHERVNNYFQPKVWLCVSDNFNVERLTKDIVKFITEEKCD
superfamily: SSF52540	1-49	SSF52540	GMGGVGKTTLAQQAYHHERVNNYFQPKVWLCVSDNFNVERLTKDIVKFI
HMMPfam: PF00931 IPR002182	1-61	NB-ARC,NBS NB-ARC	GMGGVGKTTLAQQAYHHERVNNYFQPKVWLCVSDNFNVERLTKDIVKFITEEKCDICNLDN

List of References

M Azhar, J S Heslop-Harrison
Genomes, diversity and resistance gene analogues in Musa species.
Cytogenet. Genome Res.: 2008, 121(1);59-66
PubMed:18544928 WorldCat.org DOI (I p)

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Analyses

Blast

Blast matches against Reference R-Genes. Show