PRGDB00048031 (nbs)

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nbs
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 166084750 (AM931412)
Gene Class N
Domain Type NBS, Others
Gene Species Musa textilis

Comment?

Musa textilis partial nbs gene for NBS-LRR disease resistance protein, clone NA133_TX.

DNA Sequence

GGCATGGGGGGCGTGGGCAAAACAGTGCTAGCGCAGATGGTCTTCAGCAGTCCGCAGGTGAGAAGGCGCTTCTTTCCGCGGCTATGGGTGTGCATGTCTCAGACGGTGAAAAGAGGTAGAGATGTCCGAAGAGAGATGTTGGAGAGGATGCTAATGGCACTGGGAGTCGAGGACGAGGCCATCACATCCATCTCAGAAGCCGGTGCAGGAAGCGGTGGCCTCGCCGAGTTGATGTTCGCGCTCCACCTCCAATTGATGAACAAAAGATATCTCATCGTCTTCGACGACGTCTGGAACATCGACGAATGGTACGAAGGATTAATGAGCTCGGGTTTGCCGGACGAAGGTTTATGGGCTGGTCATCTTCGTCTTGACCGTGTGTTGCCGAAGGACTGCGGCGGGTCGGTCATCGTCACAAGCAGATTGGAGGAGGTGGCTGTGAAGATGGTCGGGAAAGAGAACATGTGTCGGATCGAGCCCGATAAAGACGGGGAATTTTGTTGGAATATATTCATGGATTCAGTGACGGAGGGCGGGCTTGCGGACGATCATCCTACTCTGAGAAGCATGAAGACAGAGATCGTGGATAGATGTGGTGGCCTACCCCTTGCTGCAAAGACG


Protein sequences

Name Description Sequence
NBS-LRR disease resistance protein NBS-LRR disease resistance protein [Musa textilis].

GMGGVGKTVLAQMVFSSPQVRRRFFPRLWVCMSQTVKRGRDVRREMLERMLMALGVEDEAITSISEAGAGSGGLAELMFALHLQLMNKRYLIVFDDVWNIDEWYEGLMSSGLPDEGLWAGHLRLDRVLPKDCGGSVIVTSRLEEVAVKMVGKENMCRIEPDKDGEFCWNIFMDSVTEGGLADDHPTLRSMKTEIVDRCGGLPLAAKT

Domains

Domain Start-End Description Sequence

HMMPfam: PF00931
IPR002182
1-104 NB-ARC,NBS
NB-ARC

GMGGVGKTVLAQMVFSSPQVRRRFFPRLWVCMSQTVKRGRDVRREMLERMLMALGVEDEAITSISEAGAGSGGLAELMFALHLQLMNKRYLIVFDDVWNIDEWY

superfamily: SSF52540
1-207 SSF52540

GMGGVGKTVLAQMVFSSPQVRRRFFPRLWVCMSQTVKRGRDVRREMLERMLMALGVEDEAITSISEAGAGSGGLAELMFALHLQLMNKRYLIVFDDVWNIDEWYEGLMSSGLPDEGLWAGHLRLDRVLPKDCGGSVIVTSRLEEVAVKMVGKENMCRIEPDKDGEFCWNIFMDSVTEGGLADDHPTLRSMKTEIVDRCGGLPLAAKT

FPrintScan: PR00364
IPR000767
84-98 DISEASERSIST
Disease resistance protein

QLMNKRYLIVFDDVW

HMMPfam: PF00931
IPR002182
130-206 NB-ARC,NBS
NB-ARC

KDCGGSVIVTSRLEEVAVKMVGKENMCRIEPDKDGEFCWNIFMDSVTEGGLADDHPTLRSMKTEIVDRCGGLPLAAK

FPrintScan: PR00364
IPR000767
198-207 DISEASERSIST
Disease resistance protein

CGGLPLAAKT


List of References

M Azhar, J S Heslop-Harrison
Genomes, diversity and resistance gene analogues in Musa species.
Cytogenet. Genome Res.: 2008, 121(1);59-66
PubMed:18544928 WorldCat.org DOI (I p)





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Analyses

Blast

Blast matches against Reference R-Genes. Show


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