PRGDB00048033 (nbs)

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nbs
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 166084746 (AM931410)
Gene Class N
Domain Type NBS, Others
Gene Species Musa balbisiana x Musa textilis

Comment?

Musa balbisiana x Musa textilis partial nbs gene for NBS-LRR disease resistance protein, cultivar Butuhan, clone NA31_BT.

DNA Sequence

GGGATGGGNGGNGTGGTAAAACAGTGCTAGCGCAGATGGTCTTCAACAGTCAGCCGGTGAGAAGGCGCTTCTTTCCGCGGCTATGGGTGTGCATGTCTCAGACAGCGAAAAGAGGTAGAGATGTCCGAAGAGAGATGTTGGAGAGGATGCTAATGGCACTGGGAGTCGAGGAGGAGGCCATCACATCCATCTCAGAAGCCGGTGCAGAAAGCGGTGGCCTCGCGGAGTTGATGTTCGCGCTCCACCTCCAATTGATGAACAAAAGATATCTCATCGTGTTCGACGACGTCTGGAACATCGACGAGTGGTACGAAGGCTTAATGAGCTCGGGTTTGCCGGACGAAGGTGGATGGGCCGGTCATCTTCGTCTTGACCGTGTGTTGCCGAAGGACTGCGGCGGGTCGGTCATCGTCACAAGCAGATTGGAGGAGGTGGCTGTGAAGATGGTCGGGAAAGAGAACATGTGTCGGATCGAGCCCGATAAAGACGGGGAATGTTGTTGGAATATATTCATGGATTCAGTGACGAAGGGCGGGCTTGCGGGCGATCAGCCTACTCTGAGAAGCATGAAGACAGAGATCGTGGATAGATGTGGTGGCCTACCTCTTGCTGCAAAGACG


Protein sequences

Name Description Sequence
NBS-LRR disease resistance protein NBS-LRR disease resistance protein [Musa balbisiana x Musa textilis].

DGXXGKTVLAQMVFNSQPVRRRFFPRLWVCMSQTAKRGRDVRREMLERMLMALGVEEEAITSISEAGAESGGLAELMFALHLQLMNKRYLIVFDDVWNIDEWYEGLMSSGLPDEGGWAGHLRLDRVLPKDCGGSVIVTSRLEEVAVKMVGKENMCRIEPDKDGECCWNIFMDSVTKGGLAGDQPTLRSMKTEIVDRCGGLPLAAKT

Domains

Domain Start-End Description Sequence

HMMPfam: PF00931
IPR002182
4-103 NB-ARC,NBS
NB-ARC

XGKTVLAQMVFNSQPVRRRFFPRLWVCMSQTAKRGRDVRREMLERMLMALGVEEEAITSISEAGAESGGLAELMFALHLQLMNKRYLIVFDDVWNIDEWY

superfamily: SSF52540
5-206 SSF52540

GKTVLAQMVFNSQPVRRRFFPRLWVCMSQTAKRGRDVRREMLERMLMALGVEEEAITSISEAGAESGGLAELMFALHLQLMNKRYLIVFDDVWNIDEWYEGLMSSGLPDEGGWAGHLRLDRVLPKDCGGSVIVTSRLEEVAVKMVGKENMCRIEPDKDGECCWNIFMDSVTKGGLAGDQPTLRSMKTEIVDRCGGLPLAAKT

FPrintScan: PR00364
IPR000767
83-97 DISEASERSIST
Disease resistance protein

QLMNKRYLIVFDDVW

HMMPfam: PF00931
IPR002182
129-205 NB-ARC,NBS
NB-ARC

KDCGGSVIVTSRLEEVAVKMVGKENMCRIEPDKDGECCWNIFMDSVTKGGLAGDQPTLRSMKTEIVDRCGGLPLAAK

FPrintScan: PR00364
IPR000767
197-206 DISEASERSIST
Disease resistance protein

CGGLPLAAKT


List of References

M Azhar, J S Heslop-Harrison
Genomes, diversity and resistance gene analogues in Musa species.
Cytogenet. Genome Res.: 2008, 121(1);59-66
PubMed:18544928 WorldCat.org DOI (I p)





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Analyses

Blast

Blast matches against Reference R-Genes. Show


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