PRGDB00048055 (nbs)

nbs
Gene Type	Putative_R-Genes,_collected_from_NCBI_Protein
GenBank	166084702 (AM931388)
Gene Class	NL
Domain Type	NBS, LRR
Gene Species	Musa acuminata subsp. malaccensis
	Comment?

Musa acuminata subsp. malaccensis partial nbs gene for NBS-LRR disease resistance protein, cultivar Pisang Madu, clone N373_MA.

DNA Sequence

GGAATGGGGGGCGTAGGGAAGACTACTCTTGCTCAGCAAGCCTACAACCACGAGAGGGTGAAGGACTATTTTCAGCATGAGGTCTGGGTCTGTGTATCAGACAACTTCAACGTGGAAAGGCTTACCAAAGAGATCATAGAATCCATAACCGAGAATAAGTGTGATCTCAGCAACCTTGATACACTTCAAGTGGTTCTTAAGAACTTGACCTCCAAAAGGTTCCTGCTTGTCCTCGACGATGTGTGGAACGAGGACAGTCTGAAATGGGAAAGATTTTGTGCACCATTGAGGTACGGAGAACCAGGAAGCAAGATTTTGGTTACAACTCGCTCTAAAAAGATTGCAGAAATGGTTGGCAATCCGATCCCTCTAGGAGGTCTGGATGAAGCCAGCTATTGGAAATTGTTCAAGAAATGTGCATTTGGTTCCGAAGACGCCGGTGAATTTCCACATCTAGAAGCCATAGCAAAGAAGATCGCAGGCAGGTTCAAGGGTTGCCGTTGGCGGCAAAGACG

Protein sequences

Name	Description	Sequence
NBS-LRR disease resistance protein	NBS-LRR disease resistance protein [Musa acuminata subsp. malaccensis].	GMGGVGKTTLAQQAYNHERVKDYFQHEVWVCVSDNFNVERLTKEIIESITENKCDLSNLDTLQVVLKNLTSKRFLLVLDDVWNEDSLKWERFCAPLRYGEPGSKILVTTRSKKIAEMVGNPIPLGGLDEASYWKLFKKCAFGSEDAGEFPHLEAIAKKIAGRFKGCRWRQRR

Domains

Domain	Start-End	Description	Sequence
superfamily: SSF52540	1-160	SSF52540	GMGGVGKTTLAQQAYNHERVKDYFQHEVWVCVSDNFNVERLTKEIIESITENKCDLSNLDTLQVVLKNLTSKRFLLVLDDVWNEDSLKWERFCAPLRYGEPGSKILVTTRSKKIAEMVGNPIPLGGLDEASYWKLFKKCAFGSEDAGEFPHLEAIAKKIA
HMMPfam: PF00931 IPR002182	1-165	NB-ARC,NBS NB-ARC	GMGGVGKTTLAQQAYNHERVKDYFQHEVWVCVSDNFNVERLTKEIIESITENKCDLSNLDTLQVVLKNLTSKRFLLVLDDVWNEDSLKWERFCAPLRYGEPGSKILVTTRSKKIAEMVGNPIPLGGLDEASYWKLFKKCAFGSEDAGEFPHLEAIAKKIAGRFKG
HMMPanther: PTHR23155	1-97	PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN	GMGGVGKTTLAQQAYNHERVKDYFQHEVWVCVSDNFNVERLTKEIIESITENKCDLSNLDTLQVVLKNLTSKRFLLVLDDVWNEDSLKWERFCAPLR
HMMPanther: PTHR23155:SF121	1-97	PTHR23155:SF121,SUBFAMILY NOT NAMED	GMGGVGKTTLAQQAYNHERVKDYFQHEVWVCVSDNFNVERLTKEIIESITENKCDLSNLDTLQVVLKNLTSKRFLLVLDDVWNEDSLKWERFCAPLR
Gene3D: G3DSA:3.40.50.300	1-118	G3DSA:3.40.50.300	GMGGVGKTTLAQQAYNHERVKDYFQHEVWVCVSDNFNVERLTKEIIESITENKCDLSNLDTLQVVLKNLTSKRFLLVLDDVWNEDSLKWERFCAPLRYGEPGSKILVTTRSKKIAEMV

List of References

M Azhar, J S Heslop-Harrison
Genomes, diversity and resistance gene analogues in Musa species.
Cytogenet. Genome Res.: 2008, 121(1);59-66
PubMed:18544928 WorldCat.org DOI (I p)

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Analyses

Blast

Blast matches against Reference R-Genes. Show