PRGDB00048060 (nbs)

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nbs
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 166084692 (AM931383)
Gene Class NL
Domain Type NBS, LRR, Others
Gene Species Musa acuminata subsp. malaccensis

Comment?

Musa acuminata subsp. malaccensis partial nbs gene for NBS-LRR disease resistance protein, cultivar Pisang Pahang, clone N361_PA.

DNA Sequence

GGGATGGGGGGGGTCGGTAAGACTACTCTTGCTCAGCAAGCCTACAACCACGAGAGGGTGAAGGACTATTTTCAGCATGAGGTCTGGGTCTGTGTATCAGACAACTTCAACGTGGAAAGGCTTTCCATAGAGATCATAGAATCCATAACCGAGAATAAGTGTGATCTCAGCAACCTTGATACACTTCAAGTGGTTGTTAAGAAGAAGCTGACCTCAAAAAGATTCCTGCTTGTCCTCGACGATGTGTGGAACGAGGACAGTCTGAAATGGGAAAGATTTTGTGCACCATTGAGGTACGGAGAACCAGGAAGCAAGATTTTGGTTACAACTCGCTCTAAAAAGATTGCAGAAATGGTTGGCAATCCGATCCCTCTAGGAGGTCTGGATGAAGCCAGCTATTGGAAATTGTTCAAGAAATGTGCATTTGGGTCCGAAGACGCCGGTGAATTTCCACATCTAGAAGCCATAGCAAAGAAGATCGCTGGCAGGTTGAAGGGGTTACCGCTGGCGGCAAAGACG


Protein sequences

Name Description Sequence
NBS-LRR disease resistance protein NBS-LRR disease resistance protein [Musa acuminata subsp. malaccensis].

GMGGVGKTTLAQQAYNHERVKDYFQHEVWVCVSDNFNVERLSIEIIESITENKCDLSNLDTLQVVVKKKLTSKRFLLVLDDVWNEDSLKWERFCAPLRYGEPGSKILVTTRSKKIAEMVGNPIPLGGLDEASYWKLFKKCAFGSEDAGEFPHLEAIAKKIAGRLKGLPLAAKT

Domains

Domain Start-End Description Sequence

HMMPanther: PTHR11017:SF28
1-172 PTHR11017:SF28

GMGGVGKTTLAQQAYNHERVKDYFQHEVWVCVSDNFNVERLSIEIIESITENKCDLSNLDTLQVVVKKKLTSKRFLLVLDDVWNEDSLKWERFCAPLRYGEPGSKILVTTRSKKIAEMVGNPIPLGGLDEASYWKLFKKCAFGSEDAGEFPHLEAIAKKIAGRLKGLPLAAK

HMMPfam: PF00931
IPR002182
1-172 NB-ARC,NBS
NB-ARC

GMGGVGKTTLAQQAYNHERVKDYFQHEVWVCVSDNFNVERLSIEIIESITENKCDLSNLDTLQVVVKKKLTSKRFLLVLDDVWNEDSLKWERFCAPLRYGEPGSKILVTTRSKKIAEMVGNPIPLGGLDEASYWKLFKKCAFGSEDAGEFPHLEAIAKKIAGRLKGLPLAAK

superfamily: SSF52540
1-173 SSF52540

GMGGVGKTTLAQQAYNHERVKDYFQHEVWVCVSDNFNVERLSIEIIESITENKCDLSNLDTLQVVVKKKLTSKRFLLVLDDVWNEDSLKWERFCAPLRYGEPGSKILVTTRSKKIAEMVGNPIPLGGLDEASYWKLFKKCAFGSEDAGEFPHLEAIAKKIAGRLKGLPLAAKT

Gene3D: G3DSA:3.40.50.300
1-119 G3DSA:3.40.50.300

GMGGVGKTTLAQQAYNHERVKDYFQHEVWVCVSDNFNVERLSIEIIESITENKCDLSNLDTLQVVVKKKLTSKRFLLVLDDVWNEDSLKWERFCAPLRYGEPGSKILVTTRSKKIAEMV

HMMPanther: PTHR11017
1-172 PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

GMGGVGKTTLAQQAYNHERVKDYFQHEVWVCVSDNFNVERLSIEIIESITENKCDLSNLDTLQVVVKKKLTSKRFLLVLDDVWNEDSLKWERFCAPLRYGEPGSKILVTTRSKKIAEMVGNPIPLGGLDEASYWKLFKKCAFGSEDAGEFPHLEAIAKKIAGRLKGLPLAAK

FPrintScan: PR00364
IPR000767
69-83 DISEASERSIST
Disease resistance protein

KLTSKRFLLVLDDVW

FPrintScan: PR00364
IPR000767
164-173 DISEASERSIST
Disease resistance protein

LKGLPLAAKT


List of References

M Azhar, J S Heslop-Harrison
Genomes, diversity and resistance gene analogues in Musa species.
Cytogenet. Genome Res.: 2008, 121(1);59-66
PubMed:18544928 WorldCat.org DOI (I p)





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Analyses

Blast

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