PRGDB00048084 (nbs)

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nbs
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 166084644 (AM931359)
Gene Class NL
Domain Type NBS, LRR
Gene Species Musa acuminata subsp. malaccensis

Comment?

Musa acuminata subsp. malaccensis partial nbs gene for NBS-LRR disease resistance protein, clone N271_ML.

DNA Sequence

GGCATGGGGGGCGTGGGAAAAACAACTCTTGCTCAGCAAGCCTACAACCACGAGAGGGTGAAGGACTATTTTCAGCATGAGGTCTGGGTCTGTGTATCAGACAACTTCAACGTGGAAAGGCTTACCAAAGAGACCATAGAATCCATAACCGAGAATAAGTGTGATCTCAGCAACCTTGATACACTTCAAATGGTTCTTAAGAAGAAGTTGACCTCAAAAAGGTTCCTGCTTGTCCTCGACGATGTGTGGAACGAGGACAGCCTGAAATGGGAAAGATTTTGTGCACCGTTGAGGTACGGAGAACCAGGAAGCAAGATTTTGATTACAACTCGCTCTAAAATGATTGCAGAAATGGTCGGCAATCCGATCCCTCTAGGAGGTCTGGATGAAACCAGCTATTGGAAATTGTTCAAAAAATGTGCATTTGGTTCCGAAGACGAAGGTGAATTTCCACAGCTAGAAGCCAAAGCAAAGAAGATCGCTGGCAGGTTGAAGGGGCCTGCCCCTGGCTGCAAAGACG


Protein sequences

Name Description Sequence
NBS-LRR disease resistance protein NBS-LRR disease resistance protein [Musa acuminata subsp. malaccensis].

GMGGVGKTTLAQQAYNHERVKDYFQHEVWVCVSDNFNVERLTKETIESITENKCDLSNLDTLQMVLKKKLTSKRFLLVLDDVWNEDSLKWERFCAPLRYGEPGSKILITTRSKMIAEMVGNPIPLGGLDETSYWKLFKKCAFGSEDEGEFPQLEAKAKKIAGRLKGPAPGCKD


Domains

Domain Start-End Description Sequence

HMMPanther: PTHR23155
1-108 PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

GMGGVGKTTLAQQAYNHERVKDYFQHEVWVCVSDNFNVERLTKETIESITENKCDLSNLDTLQMVLKKKLTSKRFLLVLDDVWNEDSLKWERFCAPLRYGEPGSKILI

HMMPanther: PTHR23155:SF121
1-108 PTHR23155:SF121,SUBFAMILY NOT NAMED

GMGGVGKTTLAQQAYNHERVKDYFQHEVWVCVSDNFNVERLTKETIESITENKCDLSNLDTLQMVLKKKLTSKRFLLVLDDVWNEDSLKWERFCAPLRYGEPGSKILI

superfamily: SSF52540
1-167 SSF52540

GMGGVGKTTLAQQAYNHERVKDYFQHEVWVCVSDNFNVERLTKETIESITENKCDLSNLDTLQMVLKKKLTSKRFLLVLDDVWNEDSLKWERFCAPLRYGEPGSKILITTRSKMIAEMVGNPIPLGGLDETSYWKLFKKCAFGSEDEGEFPQLEAKAKKIAGRLKGP

HMMPfam: PF00931
IPR002182
1-166 NB-ARC,NBS
NB-ARC

GMGGVGKTTLAQQAYNHERVKDYFQHEVWVCVSDNFNVERLTKETIESITENKCDLSNLDTLQMVLKKKLTSKRFLLVLDDVWNEDSLKWERFCAPLRYGEPGSKILITTRSKMIAEMVGNPIPLGGLDETSYWKLFKKCAFGSEDEGEFPQLEAKAKKIAGRLKG


List of References

M Azhar, J S Heslop-Harrison
Genomes, diversity and resistance gene analogues in Musa species.
Cytogenet. Genome Res.: 2008, 121(1);59-66
PubMed:18544928 WorldCat.org DOI (I p)





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Analyses

Blast

Blast matches against Reference R-Genes. Show


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