PRGDB00048093 (nbs)

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nbs
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 166084626 (AM931350)
Gene Class NL
Domain Type NBS, LRR, Others
Gene Species Musa banksii

Comment?

Musa banksii partial nbs gene for NBS-LRR disease resistance protein, cultivar Paliama, clone N224_BK.

DNA Sequence

GGTATGGGGGGGGTAGGGAAGACTACTCTTGCTCAACAAGCCTACAACCACGAGAGGGTGAAGGACTATTTTCATCCTAAGGTCTGGCTCTGTGTATCCGACAACTTCAACGTGGAGAGGCTTACCAAAGAGATCATAGAATCCTTAACCCGGAATAAGTGTGATCTCAACAACTTTGATACACTTCAAGTGATTGTTAAGGATATGCTGACCTCGAAAAGGTTCCTGCTTGTCCTCGACGATGTGTGGGACGAGGACGGCCTGAAATGGGAAAGATTTTGTGCATCATTGAGGTACGGAGAACAAGGAAGCAAGATTTTGGTTACAACTCGCTCTAAAAAGATTGCAGAAATGGTTGGCAAACCGATCCCTCTAGGAGGTCTGGATGAAGCCAGCTATTGGGAATTTTTCAAAAAATGTGCATTTGGTTCCGAAGACGCCGGTGAATTTCCACAGCTAGAAGCCATAGCAAAGAAGATCGCTGGCAGGTTGAAGGGGCTGCCGCTGGCGGCAAAGACG


Protein sequences

Name Description Sequence
NBS-LRR disease resistance protein NBS-LRR disease resistance protein [Musa banksii].

GMGGVGKTTLAQQAYNHERVKDYFHPKVWLCVSDNFNVERLTKEIIESLTRNKCDLNNFDTLQVIVKDMLTSKRFLLVLDDVWDEDGLKWERFCASLRYGEQGSKILVTTRSKKIAEMVGKPIPLGGLDEASYWEFFKKCAFGSEDAGEFPQLEAIAKKIAGRLKGLPLAAKT

Domains

Domain Start-End Description Sequence

superfamily: SSF52540
1-173 SSF52540

GMGGVGKTTLAQQAYNHERVKDYFHPKVWLCVSDNFNVERLTKEIIESLTRNKCDLNNFDTLQVIVKDMLTSKRFLLVLDDVWDEDGLKWERFCASLRYGEQGSKILVTTRSKKIAEMVGKPIPLGGLDEASYWEFFKKCAFGSEDAGEFPQLEAIAKKIAGRLKGLPLAAKT

HMMPfam: PF00931
IPR002182
1-172 NB-ARC,NBS
NB-ARC

GMGGVGKTTLAQQAYNHERVKDYFHPKVWLCVSDNFNVERLTKEIIESLTRNKCDLNNFDTLQVIVKDMLTSKRFLLVLDDVWDEDGLKWERFCASLRYGEQGSKILVTTRSKKIAEMVGKPIPLGGLDEASYWEFFKKCAFGSEDAGEFPQLEAIAKKIAGRLKGLPLAAK

HMMPanther: PTHR11017
1-172 PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

GMGGVGKTTLAQQAYNHERVKDYFHPKVWLCVSDNFNVERLTKEIIESLTRNKCDLNNFDTLQVIVKDMLTSKRFLLVLDDVWDEDGLKWERFCASLRYGEQGSKILVTTRSKKIAEMVGKPIPLGGLDEASYWEFFKKCAFGSEDAGEFPQLEAIAKKIAGRLKGLPLAAK

HMMPanther: PTHR11017:SF28
1-172 PTHR11017:SF28

GMGGVGKTTLAQQAYNHERVKDYFHPKVWLCVSDNFNVERLTKEIIESLTRNKCDLNNFDTLQVIVKDMLTSKRFLLVLDDVWDEDGLKWERFCASLRYGEQGSKILVTTRSKKIAEMVGKPIPLGGLDEASYWEFFKKCAFGSEDAGEFPQLEAIAKKIAGRLKGLPLAAK

Gene3D: G3DSA:3.40.50.300
1-99 G3DSA:3.40.50.300

GMGGVGKTTLAQQAYNHERVKDYFHPKVWLCVSDNFNVERLTKEIIESLTRNKCDLNNFDTLQVIVKDMLTSKRFLLVLDDVWDEDGLKWERFCASLRY

FPrintScan: PR00364
IPR000767
69-83 DISEASERSIST
Disease resistance protein

MLTSKRFLLVLDDVW

FPrintScan: PR00364
IPR000767
164-173 DISEASERSIST
Disease resistance protein

LKGLPLAAKT


List of References

M Azhar, J S Heslop-Harrison
Genomes, diversity and resistance gene analogues in Musa species.
Cytogenet. Genome Res.: 2008, 121(1);59-66
PubMed:18544928 WorldCat.org DOI (I p)





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Analyses

Blast

Blast matches against Reference R-Genes. Show


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