PRGDB00048102 (nbs)

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nbs
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 166084608 (AM931341)
Gene Class NL
Domain Type NBS, LRR
Gene Species Musa balbisiana

Comment?

Musa balbisiana partial nbs gene for NBS-LRR disease resistance protein, cultivar Pisang Batu, clone N183_BA.

DNA Sequence

GGCATGGGGGGAGTAGAAAGACTACTCTTGCTCAGCAAGCCTACAACCACGAGAGGGTGAAGGACTATTTTCATCCTAAGGTCTGGGTCTGTGTATCCGACAACTTCAACGTGGAGAGGCTTACAAAAGAGATCATAGAATCCTTAACCCGAAAAAGGTGTGATCTCAATAACTTCGATACACTTCAAGTGGAAGTTAAGGAGAAGTTGACCTCAAAAAGGTTCCTTCTTGTCCTCGACGATGTGTGGAACGAGGACAGCCAGAAATGGGAAAGATTTTGTGCACCATTGAGGTACGGAGAACCAGGAAGCAAGATTTTGATTACAACTCGCTATAAAATGATAGCAGAAATGGTTGGCAATCCGATCCCTCTAGGGGGTCTGGATGAAGCCAGCTATTGGAAATTGTTCAAAACATGTGCATTTGGTTCCGAAGACGCCGGTGAATTTCCACATCTAGAAGCCATAGCAAAGAAGATCGCTGGCAGGTTGAAGGCTTACCCCTCGCTGCAAAGACG


Protein sequences

Name Description Sequence
NBS-LRR disease resistance protein NBS-LRR disease resistance protein [Musa balbisiana].

HGGSRKTTLAQQAYNHERVKDYFHPKVWVCVSDNFNVERLTKEIIESLTRKRCDLNNFDTLQVEVKEKLTSKRFLLVLDDVWNEDSQKWERFCAPLRYGEPGSKILITTRYKMIAEMVGNPIPLGGLDEASYWKLFKTCAFGSEDAGEFPHLEAIAKKIAGRLKAYPSLQRR


Domains

Domain Start-End Description Sequence

HMMPanther: PTHR23155
1-84 PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

HGGSRKTTLAQQAYNHERVKDYFHPKVWVCVSDNFNVERLTKEIIESLTRKRCDLNNFDTLQVEVKEKLTSKRFLLVLDDVWNE

HMMPanther: PTHR23155:SF130
1-84 PTHR23155:SF130,OS01G0781700 PROTEIN

HGGSRKTTLAQQAYNHERVKDYFHPKVWVCVSDNFNVERLTKEIIESLTRKRCDLNNFDTLQVEVKEKLTSKRFLLVLDDVWNE

HMMPfam: PF00931
IPR002182
2-162 NB-ARC,NBS
NB-ARC

GGSRKTTLAQQAYNHERVKDYFHPKVWVCVSDNFNVERLTKEIIESLTRKRCDLNNFDTLQVEVKEKLTSKRFLLVLDDVWNEDSQKWERFCAPLRYGEPGSKILITTRYKMIAEMVGNPIPLGGLDEASYWKLFKTCAFGSEDAGEFPHLEAIAKKIAGR

superfamily: SSF52540
6-160 SSF52540

KTTLAQQAYNHERVKDYFHPKVWVCVSDNFNVERLTKEIIESLTRKRCDLNNFDTLQVEVKEKLTSKRFLLVLDDVWNEDSQKWERFCAPLRYGEPGSKILITTRYKMIAEMVGNPIPLGGLDEASYWKLFKTCAFGSEDAGEFPHLEAIAKKIA


List of References

M Azhar, J S Heslop-Harrison
Genomes, diversity and resistance gene analogues in Musa species.
Cytogenet. Genome Res.: 2008, 121(1);59-66
PubMed:18544928 WorldCat.org DOI (I p)





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Analyses

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