PRGDB00048105 (nbs)

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nbs
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 166084602 (AM931338)
Gene Class NL
Domain Type NBS, LRR, Others
Gene Species Musa AAB Group

Comment?

Musa AAB Group partial nbs gene for NBS-LRR disease resistance protein, cultivar Pisang Rastali, clone N173_RT.

DNA Sequence

GGCATGGGGGGAGTTGGTAAGACTACTCTTGCTCAGCAAGCGTACAACCACGCGAGGGTGCAGGACTGTTTTCAGCTTAAGGTCTGGGTCTGTGTATCCGACAACTTCAACGTGGAGAGGCTTACCAAAGAGATCATAGAATCCTTAACCAGGAATACGTGTGATCTCAATAACTTTGATACACTTCAAGTGGTAGTTAAGGAGAAGTTGACCTCAAAAAGGTTCCTGCTTGTCCTCGACGATGTGTGGAGCGAGGACAGCCTGAAATGGGAAAGATTTTGTGCACCATTGAAGCACGGAGAACCCGGAAGCAAGATTTTGGTTACGACTCGCTCTAAAAAGATTGCAGACATGGTTGGCAATCCGTTCCCTCTAGATGGTCTGGATGACGCCAGCTATTGGGAATTTTTCAAGCAATGTGCATTTGGTTCCGAATACGCCGGTGAATGTCCACAGCTAGAAGCCATAGCAAAGAAGATCGCTTACAGGTTGAATGGGCTGCCGTTGGCGGCAAAGACG


Protein sequences

Name Description Sequence
NBS-LRR disease resistance protein NBS-LRR disease resistance protein [Musa AAB Group].

GMGGVGKTTLAQQAYNHARVQDCFQLKVWVCVSDNFNVERLTKEIIESLTRNTCDLNNFDTLQVVVKEKLTSKRFLLVLDDVWSEDSLKWERFCAPLKHGEPGSKILVTTRSKKIADMVGNPFPLDGLDDASYWEFFKQCAFGSEYAGECPQLEAIAKKIAYRLNGLPLAAKT

Domains

Domain Start-End Description Sequence

HMMPanther: PTHR11017:SF28
1-172 OS08G0296600 PROTEIN

GMGGVGKTTLAQQAYNHARVQDCFQLKVWVCVSDNFNVERLTKEIIESLTRNTCDLNNFDTLQVVVKEKLTSKRFLLVLDDVWSEDSLKWERFCAPLKHGEPGSKILVTTRSKKIADMVGNPFPLDGLDDASYWEFFKQCAFGSEYAGECPQLEAIAKKIAYRLNGLPLAAK

HMMPfam: PF00931
IPR002182
1-172 NB-ARC,NBS
NB-ARC

GMGGVGKTTLAQQAYNHARVQDCFQLKVWVCVSDNFNVERLTKEIIESLTRNTCDLNNFDTLQVVVKEKLTSKRFLLVLDDVWSEDSLKWERFCAPLKHGEPGSKILVTTRSKKIADMVGNPFPLDGLDDASYWEFFKQCAFGSEYAGECPQLEAIAKKIAYRLNGLPLAAK

superfamily: SSF52540
1-173 P-loop containing nucleoside triphosphate hydrolases

GMGGVGKTTLAQQAYNHARVQDCFQLKVWVCVSDNFNVERLTKEIIESLTRNTCDLNNFDTLQVVVKEKLTSKRFLLVLDDVWSEDSLKWERFCAPLKHGEPGSKILVTTRSKKIADMVGNPFPLDGLDDASYWEFFKQCAFGSEYAGECPQLEAIAKKIAYRLNGLPLAAKT

HMMPanther: PTHR11017
1-172 FAMILY NOT NAMED,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

GMGGVGKTTLAQQAYNHARVQDCFQLKVWVCVSDNFNVERLTKEIIESLTRNTCDLNNFDTLQVVVKEKLTSKRFLLVLDDVWSEDSLKWERFCAPLKHGEPGSKILVTTRSKKIADMVGNPFPLDGLDDASYWEFFKQCAFGSEYAGECPQLEAIAKKIAYRLNGLPLAAK

FPrintScan: PR00364
IPR000767
69-83 DISEASERSIST
Disease resistance protein

KLTSKRFLLVLDDVW

FPrintScan: PR00364
IPR000767
164-173 DISEASERSIST
Disease resistance protein

LNGLPLAAKT


List of References

M Azhar, J S Heslop-Harrison
Genomes, diversity and resistance gene analogues in Musa species.
Cytogenet. Genome Res.: 2008, 121(1);59-66
PubMed:18544928 WorldCat.org DOI (I p)





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Analyses

Blast

Blast matches against Reference R-Genes. Show


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