PRGDB00048106 (nbs)

nbs
Gene Type	Putative_R-Genes,_collected_from_NCBI_Protein
GenBank	166084600 (AM931337)
Gene Class	NL
Domain Type	NBS, LRR
Gene Species	Musa AAB Group
	Comment?

Musa AAB Group partial nbs gene for NBS-LRR disease resistance protein, cultivar Pisang Rastali, clone N171_RT.

DNA Sequence

GGGATGGGTGGCGTAGGTAAGACTACTCTTGCTCAGCAAGCCTACAACCACGAGAGTGTGAAGGACTATTTTCAGCATGAGGTCTGGGTCTGTGTATCATACAACTTCAACGTGGAAAGGCTTACCAAAGAGATCATAGAATCCATAACCGAGAATAAGTGTGATCTCAGCAACCTTGATACACTTCAAGTGGTTCTTAAGAAGAACTTGACCTCAAAAAGGTTCCTGCTTGTCCTCGACGATGTGTGGAACGAGGACAGTCTGAAATGGGAAAGATTTTGTGCACCATTGAGGTACGGAGAACCAGGAAGCAAGATTTTGGTTACAACTCGCTCTGAAAAGATTGCAGAAATGGTTGGCAATCCGATCCCTCTAGGAGGTCTGGATGAAGCCAGCTATTGGAAATTGTTCAAGAAATGCGCATTTGGTTCCGAAGACGCCGGTGAATTTCCACAGCTAGAAGCCATAGCAAAGAAGATCGCTGGCAGGTTGAAGGGCCTACCGTTCGCTGCAAAGACG

Protein sequences

Name	Description	Sequence
NBS-LRR disease resistance protein	NBS-LRR disease resistance protein [Musa AAB Group].	GMGGVGKTTLAQQAYNHESVKDYFQHEVWVCVSYNFNVERLTKEIIESITENKCDLSNLDTLQVVLKKNLTSKRFLLVLDDVWNEDSLKWERFCAPLRYGEPGSKILVTTRSEKIAEMVGNPIPLGGLDEASYWKLFKKCAFGSEDAGEFPQLEAIAKKIAGRLKGLPFAAKT

Domains

Domain	Start-End	Description	Sequence
HMMPfam: PF00931 IPR002182	1-172	NB-ARC,NBS NB-ARC	GMGGVGKTTLAQQAYNHESVKDYFQHEVWVCVSYNFNVERLTKEIIESITENKCDLSNLDTLQVVLKKNLTSKRFLLVLDDVWNEDSLKWERFCAPLRYGEPGSKILVTTRSEKIAEMVGNPIPLGGLDEASYWKLFKKCAFGSEDAGEFPQLEAIAKKIAGRLKGLPFAAK
Gene3D: G3DSA:3.40.50.300	1-85	G3DSA:3.40.50.300	GMGGVGKTTLAQQAYNHESVKDYFQHEVWVCVSYNFNVERLTKEIIESITENKCDLSNLDTLQVVLKKNLTSKRFLLVLDDVWNE
HMMPanther: PTHR11017	1-172	PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN	GMGGVGKTTLAQQAYNHESVKDYFQHEVWVCVSYNFNVERLTKEIIESITENKCDLSNLDTLQVVLKKNLTSKRFLLVLDDVWNEDSLKWERFCAPLRYGEPGSKILVTTRSEKIAEMVGNPIPLGGLDEASYWKLFKKCAFGSEDAGEFPQLEAIAKKIAGRLKGLPFAAK
superfamily: SSF52540	1-173	SSF52540	GMGGVGKTTLAQQAYNHESVKDYFQHEVWVCVSYNFNVERLTKEIIESITENKCDLSNLDTLQVVLKKNLTSKRFLLVLDDVWNEDSLKWERFCAPLRYGEPGSKILVTTRSEKIAEMVGNPIPLGGLDEASYWKLFKKCAFGSEDAGEFPQLEAIAKKIAGRLKGLPFAAKT
HMMPanther: PTHR11017:SF28	1-172	PTHR11017:SF28	GMGGVGKTTLAQQAYNHESVKDYFQHEVWVCVSYNFNVERLTKEIIESITENKCDLSNLDTLQVVLKKNLTSKRFLLVLDDVWNEDSLKWERFCAPLRYGEPGSKILVTTRSEKIAEMVGNPIPLGGLDEASYWKLFKKCAFGSEDAGEFPQLEAIAKKIAGRLKGLPFAAK

List of References

M Azhar, J S Heslop-Harrison
Genomes, diversity and resistance gene analogues in Musa species.
Cytogenet. Genome Res.: 2008, 121(1);59-66
PubMed:18544928 WorldCat.org DOI (I p)

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Analyses

Blast

Blast matches against Reference R-Genes. Show