PRGDB00048112 (nbs)

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nbs
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 166084588 (AM931331)
Gene Class NL
Domain Type NBS, LRR
Gene Species Musa textilis

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Musa textilis partial nbs gene for NBS-LRR disease resistance protein, clone N135_TX.

DNA Sequence

GGCATGGGGGGTGTGGGGAAAACTACTCTTGCTCGGCAAGCCTACAACCACGAGAGGGTGCAGGACTATTTTCAGCTTAAGGTCTGGGTCTGTGTATCTTACAACTTCAACGTGGAGAGGCTTACCAAAGAGATCATAGAATCCTTAACCCGGAAAAAGTGTCATCTTAAAAACTTTGATACACTTCAAGTGGTTGTTAAGGAGAAGTTGACCTCAAAAAGGTTCCTGCTTGTCCTCGACGATGTGTGGAACGAGGAAAGCCTGAAATGGGAAAGATTTTGTGCACCATTGAGGTCCGGAGTACCAGGAAGCAAGATTTTGGTTACAACTCGCTCTAGAAAGATTGCAGACATGGTTGGCAATCCGATCCCTCTAGATGGTCTGGATGAGGCCAGCTGTTGGAAATTGTTCAAGAAATGTGCATTTGGTTCCGAAGACGCCGGTGAATATCCACAACTAGAAGCCATAGCAAAGAAGATCGTCGGCAGGTTGAAGGGTTGCCCTTGGCGGCAAAGACG


Protein sequences

Name Description Sequence
NBS-LRR disease resistance protein NBS-LRR disease resistance protein [Musa textilis].

GMGGVGKTTLARQAYNHERVQDYFQLKVWVCVSYNFNVERLTKEIIESLTRKKCHLKNFDTLQVVVKEKLTSKRFLLVLDDVWNEESLKWERFCAPLRSGVPGSKILVTTRSRKIADMVGNPIPLDGLDEASCWKLFKKCAFGSEDAGEYPQLEAIAKKIVGRLKGCPWRQRR


Domains

Domain Start-End Description Sequence

HMMPanther: PTHR11017
1-168 PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

GMGGVGKTTLARQAYNHERVQDYFQLKVWVCVSYNFNVERLTKEIIESLTRKKCHLKNFDTLQVVVKEKLTSKRFLLVLDDVWNEESLKWERFCAPLRSGVPGSKILVTTRSRKIADMVGNPIPLDGLDEASCWKLFKKCAFGSEDAGEYPQLEAIAKKIVGRLKGCP

HMMPanther: PTHR11017:SF28
1-168 PTHR11017:SF28

GMGGVGKTTLARQAYNHERVQDYFQLKVWVCVSYNFNVERLTKEIIESLTRKKCHLKNFDTLQVVVKEKLTSKRFLLVLDDVWNEESLKWERFCAPLRSGVPGSKILVTTRSRKIADMVGNPIPLDGLDEASCWKLFKKCAFGSEDAGEYPQLEAIAKKIVGRLKGCP

superfamily: SSF52540
1-168 SSF52540

GMGGVGKTTLARQAYNHERVQDYFQLKVWVCVSYNFNVERLTKEIIESLTRKKCHLKNFDTLQVVVKEKLTSKRFLLVLDDVWNEESLKWERFCAPLRSGVPGSKILVTTRSRKIADMVGNPIPLDGLDEASCWKLFKKCAFGSEDAGEYPQLEAIAKKIVGRLKGCP

Gene3D: G3DSA:3.40.50.300
1-88 G3DSA:3.40.50.300

GMGGVGKTTLARQAYNHERVQDYFQLKVWVCVSYNFNVERLTKEIIESLTRKKCHLKNFDTLQVVVKEKLTSKRFLLVLDDVWNEESL

HMMPfam: PF00931
IPR002182
1-168 NB-ARC,NBS
NB-ARC

GMGGVGKTTLARQAYNHERVQDYFQLKVWVCVSYNFNVERLTKEIIESLTRKKCHLKNFDTLQVVVKEKLTSKRFLLVLDDVWNEESLKWERFCAPLRSGVPGSKILVTTRSRKIADMVGNPIPLDGLDEASCWKLFKKCAFGSEDAGEYPQLEAIAKKIVGRLKGCP


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Analyses

Blast

Blast matches against Reference R-Genes. Show


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