PRGDB00048116 (nbs)

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nbs
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 166084580 (AM931327)
Gene Class NL
Domain Type NBS, LRR, Others
Gene Species Musa AAB Group

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Musa AAB Group partial nbs gene for NBS-LRR disease resistance protein, cultivar Obino l'Ewai, clone N104_OE.

DNA Sequence

GGAATGGGGGGGGTGGGGAAGACTACTCTTGCTCAGCAAGCCTACAACCACGAGAGGGTGAAGGACTATTTTCAGCATGAGGTCTGGGTCTGTGTATCAGACAACTTCAACGTGGAAAGGCTAACCAAAGAGATCATAGAATCCATAACCGAGAATAAGTGTGATCTCAGCAACCTTGATACACTTCAAGTGGTTCTCAAGAAGAACTTGACCTCAAAAAGGTTCCTACTTGTCCTCGACGATGTGTGGAACGAGGACAGCCTGAAATGGGGAAGATTTTGTGCACCGTTGAGGTACGGAGAACCAGGAAGCAAGATTTTGATTACAACTCGCTCTAAAATGATTGCAGAAATGGTTGGCAATCCGATCCCTCTAGGAGGTCTGGATGAAACCAGCTATTGGAAATTGTTCAAAAAATGTGCATTTGGTTCCGAAGACGAAGGTGAATTTCCACAGCTAGAAGCCATAGCAAAGAAGATCGCTGGCAGGTTGAAGGGCCTACCTCTCGCTGCAAAGACG


Protein sequences

Name Description Sequence
NBS-LRR disease resistance protein NBS-LRR disease resistance protein [Musa AAB Group].

GMGGVGKTTLAQQAYNHERVKDYFQHEVWVCVSDNFNVERLTKEIIESITENKCDLSNLDTLQVVLKKNLTSKRFLLVLDDVWNEDSLKWGRFCAPLRYGEPGSKILITTRSKMIAEMVGNPIPLGGLDETSYWKLFKKCAFGSEDEGEFPQLEAIAKKIAGRLKGLPLAAKT

Domains

Domain Start-End Description Sequence

HMMPanther: PTHR11017
1-172 PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

GMGGVGKTTLAQQAYNHERVKDYFQHEVWVCVSDNFNVERLTKEIIESITENKCDLSNLDTLQVVLKKNLTSKRFLLVLDDVWNEDSLKWGRFCAPLRYGEPGSKILITTRSKMIAEMVGNPIPLGGLDETSYWKLFKKCAFGSEDEGEFPQLEAIAKKIAGRLKGLPLAAK

HMMPanther: PTHR11017:SF28
1-172 PTHR11017:SF28

GMGGVGKTTLAQQAYNHERVKDYFQHEVWVCVSDNFNVERLTKEIIESITENKCDLSNLDTLQVVLKKNLTSKRFLLVLDDVWNEDSLKWGRFCAPLRYGEPGSKILITTRSKMIAEMVGNPIPLGGLDETSYWKLFKKCAFGSEDEGEFPQLEAIAKKIAGRLKGLPLAAK

superfamily: SSF52540
1-173 SSF52540

GMGGVGKTTLAQQAYNHERVKDYFQHEVWVCVSDNFNVERLTKEIIESITENKCDLSNLDTLQVVLKKNLTSKRFLLVLDDVWNEDSLKWGRFCAPLRYGEPGSKILITTRSKMIAEMVGNPIPLGGLDETSYWKLFKKCAFGSEDEGEFPQLEAIAKKIAGRLKGLPLAAKT

HMMPfam: PF00931
IPR002182
1-172 NB-ARC,NBS
NB-ARC

GMGGVGKTTLAQQAYNHERVKDYFQHEVWVCVSDNFNVERLTKEIIESITENKCDLSNLDTLQVVLKKNLTSKRFLLVLDDVWNEDSLKWGRFCAPLRYGEPGSKILITTRSKMIAEMVGNPIPLGGLDETSYWKLFKKCAFGSEDEGEFPQLEAIAKKIAGRLKGLPLAAK

Gene3D: G3DSA:3.40.50.300
1-85 G3DSA:3.40.50.300

GMGGVGKTTLAQQAYNHERVKDYFQHEVWVCVSDNFNVERLTKEIIESITENKCDLSNLDTLQVVLKKNLTSKRFLLVLDDVWNE

FPrintScan: PR00364
IPR000767
69-83 DISEASERSIST
Disease resistance protein

NLTSKRFLLVLDDVW

FPrintScan: PR00364
IPR000767
164-173 DISEASERSIST
Disease resistance protein

LKGLPLAAKT


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Analyses

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