PRGDB00048119 (nbs)

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nbs
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 166084574 (AM931324)
Gene Class NL
Domain Type NBS, LRR
Gene Species Musa acuminata AAA Group

Comment?

Musa acuminata AAA Group partial nbs gene for NBS-LRR disease resistance protein, cultivar Pisang Nangka, clone N95_NK.

DNA Sequence

GGAATGGGAGGTGTCGGAAAGACTACTCTTGCTCAGCAAGCCTACAACCACGAGAGGGTGAAGGACTATTTTCATCATAAGGTCTGGCTCTGTGTATCCGACAACTTCAACGTGGAGAGGCTTACCAAAGAGATCATAGAATCCTTAACCCGGAATAAGTGCGATCTAAACAACTTTGATACACTTCAAGTGGTTGTTAAGGAGGAGTTGACCTCAAAAAGGTTCCTGCTTGTCCTCGACGATGTGTGGAACGAGGACAGCCTGAAATGGGAAAGATTTTGTGCACCATTGAGGTACGGAGTACCAGGAAGCAAGATTTTGGTTACAACTCGCTCTGAAAAGATTGCAGAAATGGTTGGCAATCGGATCCATCTAGGAGGTCTGGATGAAGCCAGCTATTGGAAATTGTTCAAAAAATGTGCATTTGGTTCCGAAGACGCCGGTGAATTTCCACAGCTAGAAGCCATAGCAAAGAAGATCGTTGGCAGGTTGAAGGGTTCCCGCTGGCGGCAAAGACG


Protein sequences

Name Description Sequence
NBS-LRR disease resistance protein NBS-LRR disease resistance protein [Musa acuminata AAA Group].

GMGGVGKTTLAQQAYNHERVKDYFHHKVWLCVSDNFNVERLTKEIIESLTRNKCDLNNFDTLQVVVKEELTSKRFLLVLDDVWNEDSLKWERFCAPLRYGVPGSKILVTTRSEKIAEMVGNRIHLGGLDEASYWKLFKKCAFGSEDAGEFPQLEAIAKKIVGRLKGSRWRQRR


Domains

Domain Start-End Description Sequence

HMMPanther: PTHR23155:SF121
1-98 PTHR23155:SF121,SUBFAMILY NOT NAMED

GMGGVGKTTLAQQAYNHERVKDYFHHKVWLCVSDNFNVERLTKEIIESLTRNKCDLNNFDTLQVVVKEELTSKRFLLVLDDVWNEDSLKWERFCAPLR

superfamily: SSF52540
1-161 SSF52540

GMGGVGKTTLAQQAYNHERVKDYFHHKVWLCVSDNFNVERLTKEIIESLTRNKCDLNNFDTLQVVVKEELTSKRFLLVLDDVWNEDSLKWERFCAPLRYGVPGSKILVTTRSEKIAEMVGNRIHLGGLDEASYWKLFKKCAFGSEDAGEFPQLEAIAKKIV

HMMPanther: PTHR23155
1-98 PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

GMGGVGKTTLAQQAYNHERVKDYFHHKVWLCVSDNFNVERLTKEIIESLTRNKCDLNNFDTLQVVVKEELTSKRFLLVLDDVWNEDSLKWERFCAPLR

HMMPfam: PF00931
IPR002182
1-166 NB-ARC,NBS
NB-ARC

GMGGVGKTTLAQQAYNHERVKDYFHHKVWLCVSDNFNVERLTKEIIESLTRNKCDLNNFDTLQVVVKEELTSKRFLLVLDDVWNEDSLKWERFCAPLRYGVPGSKILVTTRSEKIAEMVGNRIHLGGLDEASYWKLFKKCAFGSEDAGEFPQLEAIAKKIVGRLKG


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Analyses

Blast

Blast matches against Reference R-Genes. Show


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