PRGDB00048122 (nbs)

From PRG Wiki
Jump to: navigation, search
nbs
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 166084568 (AM931321)
Gene Class NL
Domain Type NBS, LRR, Others
Gene Species Musa acuminata

Comment?

Musa acuminata partial nbs gene for NBS-LRR disease resistance protein, cultivar Pisang Mas, clone N82_MS.

DNA Sequence

GGAATGGGGGGGGTCGGGAAAACGACGCTAGCTCAGCTTGTATATAACGATCCCAGGGTGTCCAACTACTTCGATACGAGGGGATGGATCTGTGTCTCTGAAGAATTTGATGTTGTTGGTTTAACACGAAAGATCTTGGTGTCCTTCTTCAAAACCACAGTTGATTACACAGAATTAAATGAGCTTCAACAAGAACTAAAAGAAAATTTGCAGGGAAAGAAGTTTTTGCCTGTTTTGGATGATGTTTGGAACGAGAAACCTAGTCTTTGGGAGTTGGTGAAAGTCCCCTTACTCAAGGCTGGAGTGGGTAAAGTCATAGTGACTACTCGGAATGAATGTGTTGCCAGAATCATGCAGACGATGGAGCCTTTGAGCTTGAACATCTTATCATTCGACAAATGCTGGATGTTGTTCGAGAAGCTTGCCTTGGAAAGCTTAGAATCCAGCAGCAGGCATAACAATTTGGTGGACATCGGTCGGAAGATCGTCGAGAAGTGCAAAGGCTTACCTCTCGCGGCAAAGACG


Protein sequences

Name Description Sequence
NBS-LRR disease resistance protein NBS-LRR disease resistance protein [Musa acuminata].

GMGGVGKTTLAQLVYNDPRVSNYFDTRGWICVSEEFDVVGLTRKILVSFFKTTVDYTELNELQQELKENLQGKKFLPVLDDVWNEKPSLWELVKVPLLKAGVGKVIVTTRNECVARIMQTMEPLSLNILSFDKCWMLFEKLALESLESSSRHNNLVDIGRKIVEKCKGLPLAAKT

Domains

Domain Start-End Description Sequence

superfamily: SSF52540
1-175 SSF52540

GMGGVGKTTLAQLVYNDPRVSNYFDTRGWICVSEEFDVVGLTRKILVSFFKTTVDYTELNELQQELKENLQGKKFLPVLDDVWNEKPSLWELVKVPLLKAGVGKVIVTTRNECVARIMQTMEPLSLNILSFDKCWMLFEKLALESLESSSRHNNLVDIGRKIVEKCKGLPLAAKT

HMMPfam: PF00931
IPR002182
1-174 NB-ARC,NBS
NB-ARC

GMGGVGKTTLAQLVYNDPRVSNYFDTRGWICVSEEFDVVGLTRKILVSFFKTTVDYTELNELQQELKENLQGKKFLPVLDDVWNEKPSLWELVKVPLLKAGVGKVIVTTRNECVARIMQTMEPLSLNILSFDKCWMLFEKLALESLESSSRHNNLVDIGRKIVEKCKGLPLAAK

HMMPanther: PTHR23155
1-158 PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

GMGGVGKTTLAQLVYNDPRVSNYFDTRGWICVSEEFDVVGLTRKILVSFFKTTVDYTELNELQQELKENLQGKKFLPVLDDVWNEKPSLWELVKVPLLKAGVGKVIVTTRNECVARIMQTMEPLSLNILSFDKCWMLFEKLALESLESSSRHNNLVDI

HMMPanther: PTHR23155:SF121
1-158 PTHR23155:SF121,SUBFAMILY NOT NAMED

GMGGVGKTTLAQLVYNDPRVSNYFDTRGWICVSEEFDVVGLTRKILVSFFKTTVDYTELNELQQELKENLQGKKFLPVLDDVWNEKPSLWELVKVPLLKAGVGKVIVTTRNECVARIMQTMEPLSLNILSFDKCWMLFEKLALESLESSSRHNNLVDI

FPrintScan: PR00364
IPR000767
69-83 DISEASERSIST
Disease resistance protein

NLQGKKFLPVLDDVW

FPrintScan: PR00364
IPR000767
166-175 DISEASERSIST
Disease resistance protein

CKGLPLAAKT


List of References

M Azhar, J S Heslop-Harrison
Genomes, diversity and resistance gene analogues in Musa species.
Cytogenet. Genome Res.: 2008, 121(1);59-66
PubMed:18544928 WorldCat.org DOI (I p)





List of Contributions

There has not been any contribution yet.


Analyses

Blast

Blast matches against Reference R-Genes. Show


Personal tools
Namespaces

Variants
Actions
PRGDB
META-SPECIES
Wiki
Toolbox