PRGDB00048129 (nbs)

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nbs
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 166084554 (AM931314)
Gene Class NL
Domain Type NBS, LRR, Others
Gene Species Musa acuminata

Comment?

Musa acuminata partial nbs gene for NBS-LRR disease resistance protein, cultivar Pisang Jari Buaya, clone N62_JB.

DNA Sequence

GGAATGGGGGGAGTGGGGAAGACTACTCTTGCTCAGCAAGCCTACAACCACGAGAGGGTGAAGGACTATTTTCAGCATGAGGTCTGGGTCTGTGTATCAGACAACTTCAACGTGGAAAGGCTTACCAAAGAGATCATAGAATCCATAACCGAGAATAAGTGTGATCTCAGCAACCTTGATACACTTCAAGTGGTTCTTAAGAACTTGACCTCCAAAAGGTTCCTGCTTGTCCTCGACGATGTGTGGAACGAGGACAGTCTGAAATGGGAAAGATTTTGTGCACCATTGAGGTACGGAGAACCAGGAAGCAAGATTTTGGTTACAACTCGCTCTAAAAAGATTGCAGAAATGGTTGGCAATCCGATCCCTCTAGGAGGTCTGGATGAAGCCAGCTATTGGAAATTGTTCAAGAAATGTGCATTTGGTTCCGAAGACGCCGGTGAATTTCCACATCTAGAAGCCATAGCAAAGAAGATCGCAGGCAGGTTGAAGGGGTTGCCGTTGGCGGCAAAGACG


Protein sequences

Name Description Sequence
NBS-LRR disease resistance protein NBS-LRR disease resistance protein [Musa acuminata].

GMGGVGKTTLAQQAYNHERVKDYFQHEVWVCVSDNFNVERLTKEIIESITENKCDLSNLDTLQVVLKNLTSKRFLLVLDDVWNEDSLKWERFCAPLRYGEPGSKILVTTRSKKIAEMVGNPIPLGGLDEASYWKLFKKCAFGSEDAGEFPHLEAIAKKIAGRLKGLPLAAKT

Domains

Domain Start-End Description Sequence

superfamily: SSF52540
1-172 SSF52540

GMGGVGKTTLAQQAYNHERVKDYFQHEVWVCVSDNFNVERLTKEIIESITENKCDLSNLDTLQVVLKNLTSKRFLLVLDDVWNEDSLKWERFCAPLRYGEPGSKILVTTRSKKIAEMVGNPIPLGGLDEASYWKLFKKCAFGSEDAGEFPHLEAIAKKIAGRLKGLPLAAKT

HMMPanther: PTHR11017:SF28
1-171 PTHR11017:SF28

GMGGVGKTTLAQQAYNHERVKDYFQHEVWVCVSDNFNVERLTKEIIESITENKCDLSNLDTLQVVLKNLTSKRFLLVLDDVWNEDSLKWERFCAPLRYGEPGSKILVTTRSKKIAEMVGNPIPLGGLDEASYWKLFKKCAFGSEDAGEFPHLEAIAKKIAGRLKGLPLAAK

HMMPanther: PTHR11017
1-171 PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

GMGGVGKTTLAQQAYNHERVKDYFQHEVWVCVSDNFNVERLTKEIIESITENKCDLSNLDTLQVVLKNLTSKRFLLVLDDVWNEDSLKWERFCAPLRYGEPGSKILVTTRSKKIAEMVGNPIPLGGLDEASYWKLFKKCAFGSEDAGEFPHLEAIAKKIAGRLKGLPLAAK

Gene3D: G3DSA:3.40.50.300
1-118 G3DSA:3.40.50.300

GMGGVGKTTLAQQAYNHERVKDYFQHEVWVCVSDNFNVERLTKEIIESITENKCDLSNLDTLQVVLKNLTSKRFLLVLDDVWNEDSLKWERFCAPLRYGEPGSKILVTTRSKKIAEMV

HMMPfam: PF00931
IPR002182
1-171 NB-ARC,NBS
NB-ARC

GMGGVGKTTLAQQAYNHERVKDYFQHEVWVCVSDNFNVERLTKEIIESITENKCDLSNLDTLQVVLKNLTSKRFLLVLDDVWNEDSLKWERFCAPLRYGEPGSKILVTTRSKKIAEMVGNPIPLGGLDEASYWKLFKKCAFGSEDAGEFPHLEAIAKKIAGRLKGLPLAAK

FPrintScan: PR00364
IPR000767
68-82 DISEASERSIST
Disease resistance protein

NLTSKRFLLVLDDVW

FPrintScan: PR00364
IPR000767
163-172 DISEASERSIST
Disease resistance protein

LKGLPLAAKT


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Analyses

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