PRGDB00048130 (nbs)

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nbs
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 166084552 (AM931313)
Gene Class NL
Domain Type NBS, LRR, Others
Gene Species Musa acuminata AAA Group

Comment?

Musa acuminata AAA Group partial nbs gene for NBS-LRR disease resistance protein, cultivar Giant Cavendish, clone N55_GC.

DNA Sequence

GGAATGGGTGGCGTGGGGAAGACTACTCTTGCTCAGCAAGCCTACAACCACGAGAGGGTGAAGGACTATTTTCATCCTAAGGTCTGGGTCTGTGTATCCGACAACTTCAACGTGGAGAGGCTTACAAAAGAGATCATAGAATCCTTAACCCGAATAAGGTGTGATCTCAATAACTTCGATACACTTCAAGTGGAAGTTAAGGAGAAGTTGACCTCAAAAAGGTTCCTTCTTGTCCTCGACGATGTGTGGAACGAGGACAGCCAGAAATGGGAAAGATTTTGTGCACCATTGAGGTACGGAGAACCAGGAAGCAAGATTTTGATTACAACTCGCTATAAAATGATAGCAGAAATGGTTGGCAATCCGATCCCTCTAGGGGGTCTGGATGAAGCCAGCTATTGGAAATTGTTCAAAACATGTGCATTTGGTTCCGAAGACGCCGGTGAATTTCCACATCTAGAAGCCATAGCAAAGAAGATCGCTGGCAGGTTGAAGGGTTTCCCGTTGGCGGCAAAGACG


Protein sequences

Name Description Sequence
NBS-LRR disease resistance protein NBS-LRR disease resistance protein [Musa acuminata AAA Group].

GMGGVGKTTLAQQAYNHERVKDYFHPKVWVCVSDNFNVERLTKEIIESLTRIRCDLNNFDTLQVEVKEKLTSKRFLLVLDDVWNEDSQKWERFCAPLRYGEPGSKILITTRYKMIAEMVGNPIPLGGLDEASYWKLFKTCAFGSEDAGEFPHLEAIAKKIAGRLKGFPLAAKT

Domains

Domain Start-End Description Sequence

HMMPfam: PF00931
IPR002182
1-172 NB-ARC,NBS
NB-ARC

GMGGVGKTTLAQQAYNHERVKDYFHPKVWVCVSDNFNVERLTKEIIESLTRIRCDLNNFDTLQVEVKEKLTSKRFLLVLDDVWNEDSQKWERFCAPLRYGEPGSKILITTRYKMIAEMVGNPIPLGGLDEASYWKLFKTCAFGSEDAGEFPHLEAIAKKIAGRLKGFPLAAK

HMMPanther: PTHR23155:SF121
1-108 PTHR23155:SF121,SUBFAMILY NOT NAMED

GMGGVGKTTLAQQAYNHERVKDYFHPKVWVCVSDNFNVERLTKEIIESLTRIRCDLNNFDTLQVEVKEKLTSKRFLLVLDDVWNEDSQKWERFCAPLRYGEPGSKILI

HMMPanther: PTHR23155
1-108 PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

GMGGVGKTTLAQQAYNHERVKDYFHPKVWVCVSDNFNVERLTKEIIESLTRIRCDLNNFDTLQVEVKEKLTSKRFLLVLDDVWNEDSQKWERFCAPLRYGEPGSKILI

Gene3D: G3DSA:3.40.50.300
1-87 G3DSA:3.40.50.300

GMGGVGKTTLAQQAYNHERVKDYFHPKVWVCVSDNFNVERLTKEIIESLTRIRCDLNNFDTLQVEVKEKLTSKRFLLVLDDVWNEDS

superfamily: SSF52540
1-173 SSF52540

GMGGVGKTTLAQQAYNHERVKDYFHPKVWVCVSDNFNVERLTKEIIESLTRIRCDLNNFDTLQVEVKEKLTSKRFLLVLDDVWNEDSQKWERFCAPLRYGEPGSKILITTRYKMIAEMVGNPIPLGGLDEASYWKLFKTCAFGSEDAGEFPHLEAIAKKIAGRLKGFPLAAKT

FPrintScan: PR00364
IPR000767
69-83 DISEASERSIST
Disease resistance protein

KLTSKRFLLVLDDVW

FPrintScan: PR00364
IPR000767
164-173 DISEASERSIST
Disease resistance protein

LKGFPLAAKT


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Analyses

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