PRGDB00048132 (nbs)

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nbs
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 166084548 (AM931311)
Gene Class NL
Domain Type NBS, LRR
Gene Species Musa acuminata subsp. burmannicoides

Comment?

Musa acuminata subsp. burmannicoides partial nbs gene for NBS-LRR disease resistance protein, cultivar Calcutta 4, clone N43_C4.

DNA Sequence

GGGATGGGAGGTGTGGGCAAGACTACTCTTGCTCAGCAAGCGTACAACCACGCGAGGGTGCAGGACTGTTTTCAGCTTAAGGTCTGGGTCTGTGTATCCGACAACTTCAACGTGGAGAGGCTTACCAAAGAGATCATAGAATCCTTAACCAGGAATACGTGTGATCTCAATAACTTTGATACACTTCAAGTGGTAGTTAAGGAGAAGTTGACCTCAAAAAGGTTCCTGCTTGTCCTCGACGATGTGTGGAGCGAGGACAGCCTGAAATGGGAAAGATTTTGTGCACCATTGAAGCACGGAGAACCCGGAAGCAAGATTTTGGTTACGACTCGCTCTAAAAAGATTGCAGACATGGTTGGCAATCCGTTCCCTCTAGATGGTCTGGATGACGCCAGCTATTGGGAATTTTTCAAGCAATGTGCATTTGGTTCCGAATACGCCGGTGAATGTCCACAGCTAGAAGCCATAGCAAAGAAGATCGCTTACAGGTTGAATGGTCTACCCCTGCTGCAAAGACG


Protein sequences

Name Description Sequence
NBS-LRR disease resistance protein NBS-LRR disease resistance protein [Musa acuminata subsp. burmannicoides].

GMGGVGKTTLAQQAYNHARVQDCFQLKVWVCVSDNFNVERLTKEIIESLTRNTCDLNNFDTLQVVVKEKLTSKRFLLVLDDVWSEDSLKWERFCAPLKHGEPGSKILVTTRSKKIADMVGNPFPLDGLDDASYWEFFKQCAFGSEYAGECPQLEAIAKKIAYRLNGLPLLQRR


Domains

Domain Start-End Description Sequence

HMMPanther: PTHR11017
1-169 PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

GMGGVGKTTLAQQAYNHARVQDCFQLKVWVCVSDNFNVERLTKEIIESLTRNTCDLNNFDTLQVVVKEKLTSKRFLLVLDDVWSEDSLKWERFCAPLKHGEPGSKILVTTRSKKIADMVGNPFPLDGLDDASYWEFFKQCAFGSEYAGECPQLEAIAKKIAYRLNGLPL

HMMPanther: PTHR11017:SF28
1-169 PTHR11017:SF28

GMGGVGKTTLAQQAYNHARVQDCFQLKVWVCVSDNFNVERLTKEIIESLTRNTCDLNNFDTLQVVVKEKLTSKRFLLVLDDVWSEDSLKWERFCAPLKHGEPGSKILVTTRSKKIADMVGNPFPLDGLDDASYWEFFKQCAFGSEYAGECPQLEAIAKKIAYRLNGLPL

Gene3D: G3DSA:3.40.50.300
1-84 G3DSA:3.40.50.300

GMGGVGKTTLAQQAYNHARVQDCFQLKVWVCVSDNFNVERLTKEIIESLTRNTCDLNNFDTLQVVVKEKLTSKRFLLVLDDVWS

HMMPfam: PF00931
IPR002182
1-169 NB-ARC,NBS
NB-ARC

GMGGVGKTTLAQQAYNHARVQDCFQLKVWVCVSDNFNVERLTKEIIESLTRNTCDLNNFDTLQVVVKEKLTSKRFLLVLDDVWSEDSLKWERFCAPLKHGEPGSKILVTTRSKKIADMVGNPFPLDGLDDASYWEFFKQCAFGSEYAGECPQLEAIAKKIAYRLNGLPL

superfamily: SSF52540
1-173 SSF52540

GMGGVGKTTLAQQAYNHARVQDCFQLKVWVCVSDNFNVERLTKEIIESLTRNTCDLNNFDTLQVVVKEKLTSKRFLLVLDDVWSEDSLKWERFCAPLKHGEPGSKILVTTRSKKIADMVGNPFPLDGLDDASYWEFFKQCAFGSEYAGECPQLEAIAKKIAYRLNGLPLLQRR


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Analyses

Blast

Blast matches against Reference R-Genes. Show


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