PRGDB00048176 (putative disease resistance protein)

putative disease resistance protein
Gene Type	Putative_R-Genes,_collected_from_NCBI_Protein
GenBank	186701209 (EF197846)
Gene Class	Unknown
Domain Type
Gene Species	Arabidopsis halleri
	Comment?

Arabidopsis halleri miR319a microRNA locus, genomic sequence.

DNA Sequence

ATGGCATCTCTAGTAGTTAAACAACTCTTCAAATCCCTCTTCTCATTCTTCTTATTAGGTCTACTCTTCTCTGATACCGTCTTATCTTTCCGAAAAACAATTGATCAGAAAAAACCCTGCAAACATTTCTCGTTCTATTTCCATGACATCCTCTACGATGGCGACAATGTAGCAAACGCAACCTCTGCCGCTATCGTAAGCCCTCCGGGACTAGGAAACTTCAAGTTTGGTAAGTTTGTGATCTTCGATGGGCCCATAACAATGGACAAGAACTATCTCTCAAAACCCCTGGCTCGCGCACAAGGCTTCTATTTTTATGACATGAAGATGGACTTCAATGCGTGGTTTTGCTACACGTTGGTGTTTAACTCAACGGAACACAAAGGGACATTGAACATAATGGGTGCTGATTTGATGATGGAGCCAACAAGAGATCTATCGGTCGTTGGTGGGACAGGTGACTTCTTCATGGCTCGTGGGATCGCTACCTTCGTGACGGATTTATTTCAAGGGGCTAAGTATTTCAGAGTCAAGATGGATATTAAGCTCTATGAATGTTACTAG

Protein sequences

Name	Description	Sequence
putative disease resistance protein	putative disease resistance protein [Arabidopsis halleri].	MASLVVKQLFKSLFSFFLLGLLFSDTVLSFRKTIDQKKPCKHFSFYFHDILYDGDNVANATSAAIVSPPGLGNFKFGKFVIFDGPITMDKNYLSKPLARAQGFYFYDMKMDFNAWFCYTLVFNSTEHKGTLNIMGADLMMEPTRDLSVVGGTGDFFMARGIATFVTDLFQGAKYFRVKMDIKLYECY

Domains

Domain	Start-End	Description	Sequence
HMMPanther: PTHR21495	16-187	PTHR21495,NUCLEOPORIN-RELATED	FFLLGLLFSDTVLSFRKTIDQKKPCKHFSFYFHDILYDGDNVANATSAAIVSPPGLGNFKFGKFVIFDGPITMDKNYLSKPLARAQGFYFYDMKMDFNAWFCYTLVFNSTEHKGTLNIMGADLMMEPTRDLSVVGGTGDFFMARGIATFVTDLFQGAKYFRVKMDIKLYECY
HMMPfam: PF03018 IPR004265	39-182	Dirigent Plant disease resistance response protein	PCKHFSFYFHDILYDGDNVANATSAAIVSPPGLGNFKFGKFVIFDGPITMDKNYLSKPLARAQGFYFYDMKMDFNAWFCYTLVFNSTEHKGTLNIMGADLMMEPTRDLSVVGGTGDFFMARGIATFVTDLFQGAKYFRVKMDIK

List of References

Norman Warthmann, Sandip Das, Christa Lanz, Detlef Weigel
Comparative analysis of the MIR319a microRNA locus in Arabidopsis and related Brassicaceae.
Mol. Biol. Evol.: 2008, 25(5);892-902
PubMed:18296705 WorldCat.org DOI (I p)

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Analyses

Blast

Blast matches against Reference R-Genes. Show