PRGDB00048256 (OSJNBa0052O12.42-2)

OSJNBa0052O12.42-2
Gene Type	Putative_R-Genes,_collected_from_NCBI_Protein
GenBank	20161828 (AP004330)
Gene Class	Unknown
Domain Type	Ser-Thr Kinase, Ser-Thr Kinase, Ser-Thr Kinase, Ser-Thr Kinase, Ser-Thr Kinase, Ser-Thr Kinase, Ser-Thr Kinase, Ser-Thr Kinase, Ser-Thr Kinase
Gene Species	Oryza sativa Japonica Group
	Comment?

Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBa0052O12.

DNA Sequence

GTGCAGAACTTCCAACAATCAAGTGATATCTCTGCAATTGCAGATAACAGAATGGCCAGTGCCTATACCTCAGAAGGCATGAGAGAATTTCTGCGGTTGACATCGTGGTGCGTGAACCCGACGAGCGAGCATCGCCCATCGATGAACTTGGTGGAGGCGGAGATAAACCGAATTCGCGAGCAAGAGATGAGGATGACCACAATCATGCCAGAAAGCACACCAACTGTGACTCTAGGTAGTCAGCTCTTCACAACATCAGGTTGAAATGAGGGAATCCATAAATTTTTCCATTCAAAGTGATGTATACAGTTTTGGTGTTTTCCTTGTGGAGTTGCTCAGTGGCAAGAGGGCTCTGTCTGATCAAAACATCATTCGATGGGCCTAAATCACCTGCATTCTCTGACACCTCCCACGGTCCATATGAACTTCAAAACGGCCAACGTCCTTGTGGATGAAGATCTCATACCCAAAGTTGCAGATGCCGGCATCCGTGCCCTGCTAGATCGATTAGGCGGTGTAGGCCCTTCATCGAGAACATCTTACGATCCTTTCCTTGATCCCAGGTAGCAGCCATGCTCCAGGTGTAAAGCTAGAATTCAAGCAGAGACTTTCCATTGCTCATGGAGCTGCTAAAGGTTAATTATCTATCGTCGATCCGTCATCGTAACCTTGTAAACCTTTTGGGGTACTGCCAGGAGAATGGAATGCAGATGCTTGTTTACGAGTATGTTCCCAATGGCAGCGTTTCTACGCATTTACATGAGCTGCAGGGAGCAAGATGTATGACTCTGGAGGAGCTAAGTTCAGCTACAAGGAACTTCAGCAATGTGAATCTTATTGGACATGGAATGTTTGGAGAGGTTTACAAGGGTTTACTCCAGGATGGCACAATTGTAGCCATTAAAAAGCGACATTCTCCTCCTAGCCATGAATTTATTCATGAGATGTCAGCAATTCTTGCAGCATCTCTAGCAGGTGCTGCAGGATTCTTGGCATTAGTAGGCGCCGCCATATTTCTTATAGTACTTTTCCTCCGGCACCGCAGAAGAGCTTCAGACTCTTCGGAAAGTAGTTCATCCAGTCCAGCTCAACCAG

Protein sequences

Name	Description	Sequence
putative disease resistance protein kinase	putative disease resistance protein kinase [Oryza sativa Japonica Group].	MSAILAASLAGAAGFLALVGAAIFLIVLFLRHRRRASDSSESSSSSPAQPELQGARCMTLEELSSATRNFSNVNLIGHGMFGEVYKGLLQDGTIVAIKKRHSPPSHEFIHEVNYLSSIRHRNLVNLLGYCQENGMQMLVYEYVPNGSVSTHLHGSSHAPGVKLEFKQRLSIAHGAAKGLNHLHSLTPPTVHMNFKTANVLVDEDLIPKVADAGIRALLDRLGGVGPSSRTSYDPFLDPRMRESINFSIQSDVYSFGVFLVELLSGKRALSDQNIIRWVQNFQQSSDISAIADNRMASAYTSEGMREFLRLTSWCVNPTSEHRPSMNLVEAEINRIREQEMRMTTIMPESTPTVTLGSQLFTTSG

Domains

Domain	Start-End	Description	Sequence
Seg: seg	2-28	seg	SAILAASLAGAAGFLALVGAAIFLIVL
HMMPanther: PTHR24420	7-351	FAMILY NOT NAMED,FAMILY NOT NAMED	ASLAGAAGFLALVGAAIFLIVLFLRHRRRASDSSESSSSSPAQPELQGARCMTLEELSSATRNFSNVNLIGHGMFGEVYKGLLQDGTIVAIKKRHSPPSHEFIHEVNYLSSIRHRNLVNLLGYCQENGMQMLVYEYVPNGSVSTHLHGSSHAPGVKLEFKQRLSIAHGAAKGLNHLHSLTPPTVHMNFKTANVLVDEDLIPKVADAGIRALLDRLGGVGPSSRTSYDPFLDPRMRESINFSIQSDVYSFGVFLVELLSGKRALSDQNIIRWVQNFQQSSDISAIADNRMASAYTSEGMREFLRLTSWCVNPTSEHRPSMNLVEAEINRIREQEMRMTTIMPESTP
HMMPanther: PTHR24420:SF451	7-351	SUBFAMILY NOT NAMED,SUBFAMILY NOT NAMED	ASLAGAAGFLALVGAAIFLIVLFLRHRRRASDSSESSSSSPAQPELQGARCMTLEELSSATRNFSNVNLIGHGMFGEVYKGLLQDGTIVAIKKRHSPPSHEFIHEVNYLSSIRHRNLVNLLGYCQENGMQMLVYEYVPNGSVSTHLHGSSHAPGVKLEFKQRLSIAHGAAKGLNHLHSLTPPTVHMNFKTANVLVDEDLIPKVADAGIRALLDRLGGVGPSSRTSYDPFLDPRMRESINFSIQSDVYSFGVFLVELLSGKRALSDQNIIRWVQNFQQSSDISAIADNRMASAYTSEGMREFLRLTSWCVNPTSEHRPSMNLVEAEINRIREQEMRMTTIMPESTP
Gene3D: G3DSA:3.30.200.20	23-128	no description	IFLIVLFLRHRRRASDSSESSSSSPAQPELQGARCMTLEELSSATRNFSNVNLIGHGMFGEVYKGLLQDGTIVAIKKRHSPPSHEFIHEVNYLSSIRHRNLVNLLG
Seg: seg	37-46	seg	SDSSESSSSS
superfamily: SSF56112 IPR011009	42-352	Protein kinase-like (PK-like) Protein kinase-like domain	SSSSSPAQPELQGARCMTLEELSSATRNFSNVNLIGHGMFGEVYKGLLQDGTIVAIKKRHSPPSHEFIHEVNYLSSIRHRNLVNLLGYCQENGMQMLVYEYVPNGSVSTHLHGSSHAPGVKLEFKQRLSIAHGAAKGLNHLHSLTPPTVHMNFKTANVLVDEDLIPKVADAGIRALLDRLGGVGPSSRTSYDPFLDPRMRESINFSIQSDVYSFGVFLVELLSGKRALSDQNIIRWVQNFQQSSDISAIADNRMASAYTSEGMREFLRLTSWCVNPTSEHRPSMNLVEAEINRIREQEMRMTTIMPESTPT
ProfileScan: PS50011 IPR000719	70-335	PROTEIN_KINASE_DOM Protein kinase, catalytic domain	FSNVNLIGHGMFGEVYKGLLQDGTIVAIKKRHSPPSHEFIHEVNYLSSIRHRNLVNLLGYCQENGMQMLVYEYVPNGSVSTHLHGSSHAPGVKLEFKQRLSIAHGAAKGLNHLHSLTPPTVHMNFKTANVLVDEDLIPKVADAGIRALLDRLGGVGPSSRTSYDPFLDPRMRESINFSIQSDVYSFGVFLVELLSGKRALSDQNIIRWVQNFQQSSDISAIADNRMASAYTSEGMREFLRLTSWCVNPTSEHRPSMNLVEAEINRI
HMMSmart: SM00220 IPR002290	70-335	Serine/Threonine protein kinases, catalytic Serine/threonine- / dual-specificity protein kinas	FSNVNLIGHGMFGEVYKGLLQDGTIVAIKKRHSPPSHEFIHEVNYLSSIRHRNLVNLLGYCQENGMQMLVYEYVPNGSVSTHLHGSSHAPGVKLEFKQRLSIAHGAAKGLNHLHSLTPPTVHMNFKTANVLVDEDLIPKVADAGIRALLDRLGGVGPSSRTSYDPFLDPRMRESINFSIQSDVYSFGVFLVELLSGKRALSDQNIIRWVQNFQQSSDISAIADNRMASAYTSEGMREFLRLTSWCVNPTSEHRPSMNLVEAEINRI
HMMSmart: SM00219 IPR020635	70-332	Tyrosine kinase, catalytic domain Tyrosine-protein kinase, catalytic domain	FSNVNLIGHGMFGEVYKGLLQDGTIVAIKKRHSPPSHEFIHEVNYLSSIRHRNLVNLLGYCQENGMQMLVYEYVPNGSVSTHLHGSSHAPGVKLEFKQRLSIAHGAAKGLNHLHSLTPPTVHMNFKTANVLVDEDLIPKVADAGIRALLDRLGGVGPSSRTSYDPFLDPRMRESINFSIQSDVYSFGVFLVELLSGKRALSDQNIIRWVQNFQQSSDISAIADNRMASAYTSEGMREFLRLTSWCVNPTSEHRPSMNLVEAEI
HMMPfam: PF07714 IPR001245	74-328	Pkinase_Tyr Serine-threonine/tyrosine-protein kinase catalytic	NLIGHGMFGEVYKGLLQDGTIVAIKKRHSPPSHEFIHEVNYLSSIRHRNLVNLLGYCQENGMQMLVYEYVPNGSVSTHLHGSSHAPGVKLEFKQRLSIAHGAAKGLNHLHSLTPPTVHMNFKTANVLVDEDLIPKVADAGIRALLDRLGGVGPSSRTSYDPFLDPRMRESINFSIQSDVYSFGVFLVELLSGKRALSDQNIIRWVQNFQQSSDISAIADNRMASAYTSEGMREFLRLTSWCVNPTSEHRPSMNLV
PatternScan: PS00107 IPR017441	76-99	PROTEIN_KINASE_ATP Protein kinase, ATP binding site	IGHGMFGEVYKGLLQDGTIVAIKK
Gene3D: G3DSA:1.10.510.10	129-325	no description	YCQENGMQMLVYEYVPNGSVSTHLHGSSHAPGVKLEFKQRLSIAHGAAKGLNHLHSLTPPTVHMNFKTANVLVDEDLIPKVADAGIRALLDRLGGVGPSSRTSYDPFLDPRMRESINFSIQSDVYSFGVFLVELLSGKRALSDQNIIRWVQNFQQSSDISAIADNRMASAYTSEGMREFLRLTSWCVNPTSEHRPSM

List of References

Takuji Sasaki, Takashi Matsumoto, Kimiko Yamamoto, Katsumi Sakata, Tomoya Baba, Yuichi Katayose, Jianzhong Wu, Yoshihito Niimura, Zhukuan Cheng, Yoshiaki Nagamura, Baltazar A Antonio, Hiroyuki Kanamori, Satomi Hosokawa, Masatoshi Masukawa, Koji Arikawa, Yoshino Chiden, Mika Hayashi, Masako Okamoto, Tsuyu Ando, Hiroyoshi Aoki, Kohei Arita, Masao Hamada, Chizuko Harada, Saori Hijishita, Mikiko Honda, Yoko Ichikawa, Atsuko Idonuma, Masumi Iijima, Michiko Ikeda, Maiko Ikeno, Sachie Ito, Tomoko Ito, Yuichi Ito, Yukiyo Ito, Aki Iwabuchi, Kozue Kamiya, Wataru Karasawa, Satoshi Katagiri, Ari Kikuta, Noriko Kobayashi, Izumi Kono, Kayo Machita, Tomoko Maehara, Hiroshi Mizuno, Tatsumi Mizubayashi, Yoshiyuki Mukai, Hideki Nagasaki, Marina Nakashima, Yuko Nakama, Yumi Nakamichi, Mari Nakamura, Nobukazu Namiki, Manami Negishi, Isamu Ohta, Nozomi Ono, Shoko Saji, Kumiko Sakai, Michie Shibata, Takanori Shimokawa, Ayahiko Shomura, Jianyu Song, Yuka Takazaki, Kimihiro Terasawa, Kumiko Tsuji, Kazunori Waki, Harumi Yamagata, Hiroko Yamane, Shoji Yoshiki, Rie Yoshihara, Kazuko Yukawa, Huisun Zhong, Hisakazu Iwama, Toshinori Endo, Hidetaka Ito, Jang Ho Hahn, Ho-Il Kim, Moo-Young Eun, Masahiro Yano, Jiming Jiang, Takashi Gojobori
The genome sequence and structure of rice chromosome 1.
Nature: 2002, 420(6913);312-6
PubMed:12447438 WorldCat.org DOI (P p)

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Analyses

Blast

Blast matches against Reference R-Genes. Show