PRGDB00048256 (OSJNBa0052O12.42-2)

OSJNBa0052O12.42-2
Gene Type	Putative_R-Genes,_collected_from_NCBI_Protein
GenBank	20161828 (AP004330)
Gene Class	Unknown
Domain Type	Ser-Thr Kinase, Ser-Thr Kinase, Ser-Thr Kinase, Ser-Thr Kinase, Ser-Thr Kinase, Ser-Thr Kinase, Ser-Thr Kinase, Ser-Thr Kinase, Ser-Thr Kinase
Gene Species	Oryza sativa Japonica Group
	Comment?

Oryza sativa Japonica Group genomic DNA, chromosome 1, BAC clone:OSJNBa0052O12.

DNA Sequence

GTGCAGAACTTCCAACAATCAAGTGATATCTCTGCAATTGCAGATAACAGAATGGCCAGTGCCTATACCTCAGAAGGCATGAGAGAATTTCTGCGGTTGACATCGTGGTGCGTGAACCCGACGAGCGAGCATCGCCCATCGATGAACTTGGTGGAGGCGGAGATAAACCGAATTCGCGAGCAAGAGATGAGGATGACCACAATCATGCCAGAAAGCACACCAACTGTGACTCTAGGTAGTCAGCTCTTCACAACATCAGGTTGAAATGAGGGAATCCATAAATTTTTCCATTCAAAGTGATGTATACAGTTTTGGTGTTTTCCTTGTGGAGTTGCTCAGTGGCAAGAGGGCTCTGTCTGATCAAAACATCATTCGATGGGCCTAAATCACCTGCATTCTCTGACACCTCCCACGGTCCATATGAACTTCAAAACGGCCAACGTCCTTGTGGATGAAGATCTCATACCCAAAGTTGCAGATGCCGGCATCCGTGCCCTGCTAGATCGATTAGGCGGTGTAGGCCCTTCATCGAGAACATCTTACGATCCTTTCCTTGATCCCAGGTAGCAGCCATGCTCCAGGTGTAAAGCTAGAATTCAAGCAGAGACTTTCCATTGCTCATGGAGCTGCTAAAGGTTAATTATCTATCGTCGATCCGTCATCGTAACCTTGTAAACCTTTTGGGGTACTGCCAGGAGAATGGAATGCAGATGCTTGTTTACGAGTATGTTCCCAATGGCAGCGTTTCTACGCATTTACATGAGCTGCAGGGAGCAAGATGTATGACTCTGGAGGAGCTAAGTTCAGCTACAAGGAACTTCAGCAATGTGAATCTTATTGGACATGGAATGTTTGGAGAGGTTTACAAGGGTTTACTCCAGGATGGCACAATTGTAGCCATTAAAAAGCGACATTCTCCTCCTAGCCATGAATTTATTCATGAGATGTCAGCAATTCTTGCAGCATCTCTAGCAGGTGCTGCAGGATTCTTGGCATTAGTAGGCGCCGCCATATTTCTTATAGTACTTTTCCTCCGGCACCGCAGAAGAGCTTCAGACTCTTCGGAAAGTAGTTCATCCAGTCCAGCTCAACCAG

Protein sequences

Name	Description	Sequence
putative disease resistance protein kinase	putative disease resistance protein kinase [Oryza sativa Japonica Group].	MSAILAASLAGAAGFLALVGAAIFLIVLFLRHRRRASDSSESSSSSPAQPELQGARCMTLEELSSATRNFSNVNLIGHGMFGEVYKGLLQDGTIVAIKKRHSPPSHEFIHEVNYLSSIRHRNLVNLLGYCQENGMQMLVYEYVPNGSVSTHLHGSSHAPGVKLEFKQRLSIAHGAAKGLNHLHSLTPPTVHMNFKTANVLVDEDLIPKVADAGIRALLDRLGGVGPSSRTSYDPFLDPRMRESINFSIQSDVYSFGVFLVELLSGKRALSDQNIIRWVQNFQQSSDISAIADNRMASAYTSEGMREFLRLTSWCVNPTSEHRPSMNLVEAEINRIREQEMRMTTIMPESTPTVTLGSQLFTTSG

Domains

Domain	Start-End	Description	Sequence
Seg: seg	2-28	seg	SAILAASLAGAAGFLALVGAAIFLIVL
HMMPanther: PTHR24420	7-351	FAMILY NOT NAMED,FAMILY NOT NAMED	ASLAGAAGFLALVGAAIFLIVLFLRHRRRASDSSESSSSSPAQPELQGARCMTLEELSSATRNFSNVNLIGHGMFGEVYKGLLQDGTIVAIKKRHSPPSHEFIHEVNYLSSIRHRNLVNLLGYCQENGMQMLVYEYVPNGSVSTHLHGSSHAPGVKLEFKQRLSIAHGAAKGLNHLHSLTPPTVHMNFKTANVLVDEDLIPKVADAGIRALLDRLGGVGPSSRTSYDPFLDPRMRESINFSIQSDVYSFGVFLVELLSGKRALSDQNIIRWVQNFQQSSDISAIADNRMASAYTSEGMREFLRLTSWCVNPTSEHRPSMNLVEAEINRIREQEMRMTTIMPESTP
HMMPanther: PTHR24420:SF451	7-351	SUBFAMILY NOT NAMED,SUBFAMILY NOT NAMED	ASLAGAAGFLALVGAAIFLIVLFLRHRRRASDSSESSSSSPAQPELQGARCMTLEELSSATRNFSNVNLIGHGMFGEVYKGLLQDGTIVAIKKRHSPPSHEFIHEVNYLSSIRHRNLVNLLGYCQENGMQMLVYEYVPNGSVSTHLHGSSHAPGVKLEFKQRLSIAHGAAKGLNHLHSLTPPTVHMNFKTANVLVDEDLIPKVADAGIRALLDRLGGVGPSSRTSYDPFLDPRMRESINFSIQSDVYSFGVFLVELLSGKRALSDQNIIRWVQNFQQSSDISAIADNRMASAYTSEGMREFLRLTSWCVNPTSEHRPSMNLVEAEINRIREQEMRMTTIMPESTP
Gene3D: G3DSA:3.30.200.20	23-128	no description	IFLIVLFLRHRRRASDSSESSSSSPAQPELQGARCMTLEELSSATRNFSNVNLIGHGMFGEVYKGLLQDGTIVAIKKRHSPPSHEFIHEVNYLSSIRHRNLVNLLG
Seg: seg	37-46	seg	SDSSESSSSS
superfamily: SSF56112 IPR011009	42-352	Protein kinase-like (PK-like) Protein kinase-like domain	SSSSSPAQPELQGARCMTLEELSSATRNFSNVNLIGHGMFGEVYKGLLQDGTIVAIKKRHSPPSHEFIHEVNYLSSIRHRNLVNLLGYCQENGMQMLVYEYVPNGSVSTHLHGSSHAPGVKLEFKQRLSIAHGAAKGLNHLHSLTPPTVHMNFKTANVLVDEDLIPKVADAGIRALLDRLGGVGPSSRTSYDPFLDPRMRESINFSIQSDVYSFGVFLVELLSGKRALSDQNIIRWVQNFQQSSDISAIADNRMASAYTSEGMREFLRLTSWCVNPTSEHRPSMNLVEAEINRIREQEMRMTTIMPESTPT
ProfileScan: PS50011 IPR000719	70-335	PROTEIN_KINASE_DOM Protein kinase, catalytic domain	FSNVNLIGHGMFGEVYKGLLQDGTIVAIKKRHSPPSHEFIHEVNYLSSIRHRNLVNLLGYCQENGMQMLVYEYVPNGSVSTHLHGSSHAPGVKLEFKQRLSIAHGAAKGLNHLHSLTPPTVHMNFKTANVLVDEDLIPKVADAGIRALLDRLGGVGPSSRTSYDPFLDPRMRESINFSIQSDVYSFGVFLVELLSGKRALSDQNIIRWVQNFQQSSDISAIADNRMASAYTSEGMREFLRLTSWCVNPTSEHRPSMNLVEAEINRI
HMMSmart: SM00220 IPR002290	70-335	Serine/Threonine protein kinases, catalytic Serine/threonine- / dual-specificity protein kinas	FSNVNLIGHGMFGEVYKGLLQDGTIVAIKKRHSPPSHEFIHEVNYLSSIRHRNLVNLLGYCQENGMQMLVYEYVPNGSVSTHLHGSSHAPGVKLEFKQRLSIAHGAAKGLNHLHSLTPPTVHMNFKTANVLVDEDLIPKVADAGIRALLDRLGGVGPSSRTSYDPFLDPRMRESINFSIQSDVYSFGVFLVELLSGKRALSDQNIIRWVQNFQQSSDISAIADNRMASAYTSEGMREFLRLTSWCVNPTSEHRPSMNLVEAEINRI
HMMSmart: SM00219 IPR020635	70-332	Tyrosine kinase, catalytic domain Tyrosine-protein kinase, catalytic domain	FSNVNLIGHGMFGEVYKGLLQDGTIVAIKKRHSPPSHEFIHEVNYLSSIRHRNLVNLLGYCQENGMQMLVYEYVPNGSVSTHLHGSSHAPGVKLEFKQRLSIAHGAAKGLNHLHSLTPPTVHMNFKTANVLVDEDLIPKVADAGIRALLDRLGGVGPSSRTSYDPFLDPRMRESINFSIQSDVYSFGVFLVELLSGKRALSDQNIIRWVQNFQQSSDISAIADNRMASAYTSEGMREFLRLTSWCVNPTSEHRPSMNLVEAEI
HMMPfam: PF07714 IPR001245	74-328	Pkinase_Tyr Serine-threonine/tyrosine-protein kinase catalytic	NLIGHGMFGEVYKGLLQDGTIVAIKKRHSPPSHEFIHEVNYLSSIRHRNLVNLLGYCQENGMQMLVYEYVPNGSVSTHLHGSSHAPGVKLEFKQRLSIAHGAAKGLNHLHSLTPPTVHMNFKTANVLVDEDLIPKVADAGIRALLDRLGGVGPSSRTSYDPFLDPRMRESINFSIQSDVYSFGVFLVELLSGKRALSDQNIIRWVQNFQQSSDISAIADNRMASAYTSEGMREFLRLTSWCVNPTSEHRPSMNLV
PatternScan: PS00107 IPR017441	76-99	PROTEIN_KINASE_ATP Protein kinase, ATP binding site	IGHGMFGEVYKGLLQDGTIVAIKK
Gene3D: G3DSA:1.10.510.10	129-325	no description	YCQENGMQMLVYEYVPNGSVSTHLHGSSHAPGVKLEFKQRLSIAHGAAKGLNHLHSLTPPTVHMNFKTANVLVDEDLIPKVADAGIRALLDRLGGVGPSSRTSYDPFLDPRMRESINFSIQSDVYSFGVFLVELLSGKRALSDQNIIRWVQNFQQSSDISAIADNRMASAYTSEGMREFLRLTSWCVNPTSEHRPSM

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Analyses

Blast

Blast matches against Reference R-Genes. Show