PRGDB00048260 (P0041E11.42)

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P0041E11.42
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 8570044 (AP002521)
Gene Class Unknown
Domain Type LRR, LRR, Ser-Thr Kinase, Ser-Thr Kinase
Gene Species Oryza sativa Japonica Group

Comment?

Oryza sativa Japonica Group genomic DNA, chromosome 1, PAC clone:P0041E11.

DNA Sequence

ATGCCGGCCCCGTGCTTGCCCGACCAGGCAGCGGCGCTGCTCCGCCTGAAACATTCCTTCAACATGACCAACAAGTCCGAGTGCACCCTCGCATCATGGCGCGCCGGCACGGACTGCTGCCGCTGGGAGGGCGTCCGCTGCGGCGTCGGCATCGGCGTTGGCCATGTGACCTCGCTTGACCTCGGTGAGTGCGGATTGGAGAGCGCTGCTCTTGACCCTGCGCTTTTCGAGCTCACTTCGCTCAGGCACCTTAACCTCGCGTGGAACAATTTCAGCGGGTCTCATATTCCCACCATTGGGTTCGAACGGCTCACTGAGCTCACCTACCTCAATCTCTCCAACTCCAAATTTGCAGGCCAGATACCAAATACAATAGGACGTCTCACTAATTTGATATCCCTTGACCTCTCCACTGATTTTTTCCTTATTGATCTAGATGATGAGTTCTTATCAGTTGCCACCTATTCACCCGCTTGGTTACTTGTGGCACCAAACATTGTGTCAATAGTCGCAAACCTCCACAACCTGAAGGAACTTTATATGGGCACAATAGACTTGTCCAGCAACAGCATGGTACAGTGGTGCAGTGCCTTTTCAAACTCCACTACCCCTCAACTTCAGGTCCTTAGCTTACCATATTGCTACCTCGAGGTTCCCATTTGTGAATCATTGTCGGGTATACGCTCACTGAGTGAGATTAACCTACAGTACAACTTCATACACGGTCCCATTCCAGAGTCCTTTGGAGATTTACCTTCCCTAAGTGTTCTTAGTCTTACACACAACAGTCTAGAAGGGAGCTTCCCAAGTAGAATCTTCCAGAACAAAAACTTAACCTCTGTTGATGTTAGGTACAACTTCGAACTCTCCGGTTCGTTGCCAAAAAATATCTCATCAAATGACATTTTGGTAGATCTTCTTGTTAGCAGTACTAACTTCTCTGGTCCAATCCCTAACTCAGTAGGCAACATCAAATCCTTGGAAAATTTGGGTGTTGCATCAAGTGACTTCTCCCAAGAGCTTCCCTCTTCTATTGGCCAGCTGAGATCGTTGAATTCGTTAGAGATTACAGGGGCTGGTGTAGTAGGAGCAGTACCATCTTGGATTGCAAATTTGACTTCATTGACCCTTCTCGACTTCTCGAACTGTGGCTTATCTGGGAAGATACCATCTGCGATAGGTGCTATCAAGAATCTGAAGAGGTTAGCGTTATACAAATGTAACTTTTCTGGCCAAATACCTCAAGATCTATTTAACCTAACTCAATTGAGAGTCATATATCTTCAATATAATAACTTCATTGGTACGTTGGAGCTCAGCTCATTTTGGAAACTACCAGACCTATTTTCTTTGAATCTTTCCAACAACAAACTATCAGTTGTAGATGGTGAGAAAAATAATTCTTCATGGGTGTCCATAAACTATTTCTACACCTTGCGCCTAGCATATTGTAACATATCCAATTTCCCTAGTGCCTTGAGTCTCATGCCTTGGGTTGGAAATCTTGATCTTTCAGGAAATCAGATCCATGGTACTATACCTCAGTGGGCGTGGGAAACTTCGAGCGAGTTGTTTATCCTCAACTTATTACACAACAAATTCGACAATATAGGATATAATTATCTTCCATTTTACTTAGAGATTGTTGATCTCAGTTATAACTTATTCCAAGGACCCATACCTATAACTGGACCTGACACTTGGTTGCTCGATTGCTCAAACAACCGGTTCTCATCCATGCCATTTAACTTCAGTTCCCAGCTTAGTGGGATGTCCTATCTCATGGCCTCCAGAAACAACCTATCTGGAGAAATTCCACTCTCAATTTGTGATGCAAGGGACATTCTGCTCCTTGATCTTTCTTACAACAATTTAAGTGGCTTGATTCCACTTTGTTTACTGGAGGATATCAATTCCCTTAGTGTGTTCAACTTGAAAGCAAATCAACTTCATGGTGAGTTACCTCGTAATATCAAGAAAGGATGTGCATTAGAGGCATTAGATTTCAGTGAGAACATGTTTGAAGGACAACTACCCACATCTCTAGTTGCTTGCAGAGATTTGGAGGTTTTAGACATTGGAAATAATCAGATTAGCGGTGGTTTTCCATGTTGGGCTAGTATGCTTCCTAAACTTCAGGTTCTTGTCCTGAAGTCCAACAAGTTCACCGGAGAGGTGGGGTCTTCTGCCATCGAAAAAGATAACACTTGCGAATTTGCAAATCTACGGATTCTTGATTTGGCTTCAAACAACTTTTCTGGTACTCTACATCACAAGTGGTTGAAAAGGTTAAAATCCATGATGGAGACATCTTCTAGTGCGACATTGCTTATGCAATATCAGCACAACGTGCATAGTACAACATATCAGTTTTCTACTTCAATCGCATATAAAGGGTATGAAGTCACATTTACAAAAATCTTGAGGACCCTTGTAGTCATCGATGTTTCAGACAATGCACTCCATGGTAGCATTCCCAAGTCAATTGGAGAGCTCGTTCTCCTCCGTGGGCTAAACATGTCACATAATGCCCTCACAGGACCAATTCCATCTCAGCTTGGTGCTCTGCATGAACTCGAGTCATTGGACCTCTCATCAAATGATCTTTCAGGGGAGATTCCACAGGAGTTAGCACAGCTACACTTCCTCTCAGTGCTGAACCTGTCCTACAACGGTTTGGTTGGGAGAATACCAGATTCACCCCAGTTCTCGAACAATCTCTCCTATCTGGGGAACATTGGTCTATGTGGGTTTCCATTGTCCAAGGAATGCAGCAACATGACAACACCACCAAGCTCACATCCTTCAGAGGAAAAACATGTGGATGTTATACTGTTCCTCTTTGTTGGACTTGGAGTTGGCATCGGGTTTGCAGTTATAATCGTTGTGACATGGGGAATCCGCATCAAGAAAAGGTCCCAAGACAGCAGATTTCCGTTTTGGAAAAAAGTTCTCTGTATGTAA


Protein sequences

Name Description Sequence
putative verticillium wilt disease resistance protein putative verticillium wilt disease resistance protein [Oryza sativa Japonica Group].

MPAPCLPDQAAALLRLKHSFNMTNKSECTLASWRAGTDCCRWEGVRCGVGIGVGHVTSLDLGECGLESAALDPALFELTSLRHLNLAWNNFSGSHIPTIGFERLTELTYLNLSNSKFAGQIPNTIGRLTNLISLDLSTDFFLIDLDDEFLSVATYSPAWLLVAPNIVSIVANLHNLKELYMGTIDLSSNSMVQWCSAFSNSTTPQLQVLSLPYCYLEVPICESLSGIRSLSEINLQYNFIHGPIPESFGDLPSLSVLSLTHNSLEGSFPSRIFQNKNLTSVDVRYNFELSGSLPKNISSNDILVDLLVSSTNFSGPIPNSVGNIKSLENLGVASSDFSQELPSSIGQLRSLNSLEITGAGVVGAVPSWIANLTSLTLLDFSNCGLSGKIPSAIGAIKNLKRLALYKCNFSGQIPQDLFNLTQLRVIYLQYNNFIGTLELSSFWKLPDLFSLNLSNNKLSVVDGEKNNSSWVSINYFYTLRLAYCNISNFPSALSLMPWVGNLDLSGNQIHGTIPQWAWETSSELFILNLLHNKFDNIGYNYLPFYLEIVDLSYNLFQGPIPITGPDTWLLDCSNNRFSSMPFNFSSQLSGMSYLMASRNNLSGEIPLSICDARDILLLDLSYNNLSGLIPLCLLEDINSLSVFNLKANQLHGELPRNIKKGCALEALDFSENMFEGQLPTSLVACRDLEVLDIGNNQISGGFPCWASMLPKLQVLVLKSNKFTGEVGSSAIEKDNTCEFANLRILDLASNNFSGTLHHKWLKRLKSMMETSSSATLLMQYQHNVHSTTYQFSTSIAYKGYEVTFTKILRTLVVIDVSDNALHGSIPKSIGELVLLRGLNMSHNALTGPIPSQLGALHELESLDLSSNDLSGEIPQELAQLHFLSVLNLSYNGLVGRIPDSPQFSNNLSYLGNIGLCGFPLSKECSNMTTPPSSHPSEEKHVDVILFLFVGLGVGIGFAVIIVVTWGIRIKKRSQDSRFPFWKKVLCM


Domains

Domain Start-End Description Sequence

Gene3D: G3DSA:3.80.10.10
4-151 G3DSA:3.80.10.10

PCLPDQAAALLRLKHSFNMTNKSECTLASWRAGTDCCRWEGVRCGVGIGVGHVTSLDLGECGLESAALDPALFELTSLRHLNLAWNNFSGSHIPTIGFERLTELTYLNLSNSKFAGQIPNTIGRLTNLISLDLSTDFFLIDLDDEFLS

HMMPfam: PF08263
IPR013210
7-47 LRRNT_2
Leucine-rich repeat-containing N-terminal, type 2

PDQAAALLRLKHSFNMTNKSECTLASWRAGTDCCRWEGVRC

HMMPanther: PTHR26393:SF519
12-969 PTHR26393:SF519

ALLRLKHSFNMTNKSECTLASWRAGTDCCRWEGVRCGVGIGVGHVTSLDLGECGLESAALDPALFELTSLRHLNLAWNNFSGSHIPTIGFERLTELTYLNLSNSKFAGQIPNTIGRLTNLISLDLSTDFFLIDLDDEFLSVATYSPAWLLVAPNIVSIVANLHNLKELYMGTIDLSSNSMVQWCSAFSNSTTPQLQVLSLPYCYLEVPICESLSGIRSLSEINLQYNFIHGPIPESFGDLPSLSVLSLTHNSLEGSFPSRIFQNKNLTSVDVRYNFELSGSLPKNISSNDILVDLLVSSTNFSGPIPNSVGNIKSLENLGVASSDFSQELPSSIGQLRSLNSLEITGAGVVGAVPSWIANLTSLTLLDFSNCGLSGKIPSAIGAIKNLKRLALYKCNFSGQIPQDLFNLTQLRVIYLQYNNFIGTLELSSFWKLPDLFSLNLSNNKLSVVDGEKNNSSWVSINYFYTLRLAYCNISNFPSALSLMPWVGNLDLSGNQIHGTIPQWAWETSSELFILNLLHNKFDNIGYNYLPFYLEIVDLSYNLFQGPIPITGPDTWLLDCSNNRFSSMPFNFSSQLSGMSYLMASRNNLSGEIPLSICDARDILLLDLSYNNLSGLIPLCLLEDINSLSVFNLKANQLHGELPRNIKKGCALEALDFSENMFEGQLPTSLVACRDLEVLDIGNNQISGGFPCWASMLPKLQVLVLKSNKFTGEVGSSAIEKDNTCEFANLRILDLASNNFSGTLHHKWLKRLKSMMETSSSATLLMQYQHNVHSTTYQFSTSIAYKGYEVTFTKILRTLVVIDVSDNALHGSIPKSIGELVLLRGLNMSHNALTGPIPSQLGALHELESLDLSSNDLSGEIPQELAQLHFLSVLNLSYNGLVGRIPDSPQFSNNLSYLGNIGLCGFPLSKECSNMTTPPSSHPSEEKHVDVILFLFVGLGVGIGFAVIIVVTWGIRI

HMMPanther: PTHR26393
12-969 PTHR26393,FAMILY NOT NAMED

ALLRLKHSFNMTNKSECTLASWRAGTDCCRWEGVRCGVGIGVGHVTSLDLGECGLESAALDPALFELTSLRHLNLAWNNFSGSHIPTIGFERLTELTYLNLSNSKFAGQIPNTIGRLTNLISLDLSTDFFLIDLDDEFLSVATYSPAWLLVAPNIVSIVANLHNLKELYMGTIDLSSNSMVQWCSAFSNSTTPQLQVLSLPYCYLEVPICESLSGIRSLSEINLQYNFIHGPIPESFGDLPSLSVLSLTHNSLEGSFPSRIFQNKNLTSVDVRYNFELSGSLPKNISSNDILVDLLVSSTNFSGPIPNSVGNIKSLENLGVASSDFSQELPSSIGQLRSLNSLEITGAGVVGAVPSWIANLTSLTLLDFSNCGLSGKIPSAIGAIKNLKRLALYKCNFSGQIPQDLFNLTQLRVIYLQYNNFIGTLELSSFWKLPDLFSLNLSNNKLSVVDGEKNNSSWVSINYFYTLRLAYCNISNFPSALSLMPWVGNLDLSGNQIHGTIPQWAWETSSELFILNLLHNKFDNIGYNYLPFYLEIVDLSYNLFQGPIPITGPDTWLLDCSNNRFSSMPFNFSSQLSGMSYLMASRNNLSGEIPLSICDARDILLLDLSYNNLSGLIPLCLLEDINSLSVFNLKANQLHGELPRNIKKGCALEALDFSENMFEGQLPTSLVACRDLEVLDIGNNQISGGFPCWASMLPKLQVLVLKSNKFTGEVGSSAIEKDNTCEFANLRILDLASNNFSGTLHHKWLKRLKSMMETSSSATLLMQYQHNVHSTTYQFSTSIAYKGYEVTFTKILRTLVVIDVSDNALHGSIPKSIGELVLLRGLNMSHNALTGPIPSQLGALHELESLDLSSNDLSGEIPQELAQLHFLSVLNLSYNGLVGRIPDSPQFSNNLSYLGNIGLCGFPLSKECSNMTTPPSSHPSEEKHVDVILFLFVGLGVGIGFAVIIVVTWGIRI

superfamily: SSF52058
30-287 SSF52058,LRR

LASWRAGTDCCRWEGVRCGVGIGVGHVTSLDLGECGLESAALDPALFELTSLRHLNLAWNNFSGSHIPTIGFERLTELTYLNLSNSKFAGQIPNTIGRLTNLISLDLSTDFFLIDLDDEFLSVATYSPAWLLVAPNIVSIVANLHNLKELYMGTIDLSSNSMVQWCSAFSNSTTPQLQVLSLPYCYLEVPICESLSGIRSLSEINLQYNFIHGPIPESFGDLPSLSVLSLTHNSLEGSFPSRIFQNKNLTSVDVRYNF

HMMPfam: PF13855
55-116 LRR_8,Leucine rich repeat

HVTSLDLGECGLESAALDPALFELTSLRHLNLAWNNFSGSHIPTIGFERLTELTYLNLSNSK

Gene3D: G3DSA:3.80.10.10
203-328 G3DSA:3.80.10.10

TPQLQVLSLPYCYLEVPICESLSGIRSLSEINLQYNFIHGPIPESFGDLPSLSVLSLTHNSLEGSFPSRIFQNKNLTSVDVRYNFELSGSLPKNISSNDILVDLLVSSTNFSGPIPNSVGNIKSLE

superfamily: SSF52047
219-545 SSF52047,LRR

PICESLSGIRSLSEINLQYNFIHGPIPESFGDLPSLSVLSLTHNSLEGSFPSRIFQNKNLTSVDVRYNFELSGSLPKNISSNDILVDLLVSSTNFSGPIPNSVGNIKSLENLGVASSDFSQELPSSIGQLRSLNSLEITGAGVVGAVPSWIANLTSLTLLDFSNCGLSGKIPSAIGAIKNLKRLALYKCNFSGQIPQDLFNLTQLRVIYLQYNNFIGTLELSSFWKLPDLFSLNLSNNKLSVVDGEKNNSSWVSINYFYTLRLAYCNISNFPSALSLMPWVGNLDLSGNQIHGTIPQWAWETSSELFILNLLHNKFDNIGYNYLPFY

Gene3D: G3DSA:3.80.10.10
329-554 G3DSA:3.80.10.10

NLGVASSDFSQELPSSIGQLRSLNSLEITGAGVVGAVPSWIANLTSLTLLDFSNCGLSGKIPSAIGAIKNLKRLALYKCNFSGQIPQDLFNLTQLRVIYLQYNNFIGTLELSSFWKLPDLFSLNLSNNKLSVVDGEKNNSSWVSINYFYTLRLAYCNISNFPSALSLMPWVGNLDLSGNQIHGTIPQWAWETSSELFILNLLHNKFDNIGYNYLPFYLEIVDLSYN

HMMPfam: PF13516
372-394 LRR_6,Leucine Rich repeat

LTSLTLLDFSNCGLSGKIPSAIG

HMMPfam: PF13855
398-458 LRR_8,Leucine rich repeat

NLKRLALYKCNFSGQIPQDLFNLTQLRVIYLQYNNFIGTLELSSFWKLPDLFSLNLSNNKL

superfamily: SSF52047
546-911 SSF52047,LRR

LEIVDLSYNLFQGPIPITGPDTWLLDCSNNRFSSMPFNFSSQLSGMSYLMASRNNLSGEIPLSICDARDILLLDLSYNNLSGLIPLCLLEDINSLSVFNLKANQLHGELPRNIKKGCALEALDFSENMFEGQLPTSLVACRDLEVLDIGNNQISGGFPCWASMLPKLQVLVLKSNKFTGEVGSSAIEKDNTCEFANLRILDLASNNFSGTLHHKWLKRLKSMMETSSSATLLMQYQHNVHSTTYQFSTSIAYKGYEVTFTKILRTLVVIDVSDNALHGSIPKSIGELVLLRGLNMSHNALTGPIPSQLGALHELESLDLSSNDLSGEIPQELAQLHFLSVLNLSYNGLVGRIPDSPQFSNNLSYLG

Gene3D: G3DSA:3.80.10.10
555-771 G3DSA:3.80.10.10

LFQGPIPITGPDTWLLDCSNNRFSSMPFNFSSQLSGMSYLMASRNNLSGEIPLSICDARDILLLDLSYNNLSGLIPLCLLEDINSLSVFNLKANQLHGELPRNIKKGCALEALDFSENMFEGQLPTSLVACRDLEVLDIGNNQISGGFPCWASMLPKLQVLVLKSNKFTGEVGSSAIEKDNTCEFANLRILDLASNNFSGTLHHKWLKRLKSMMETS

FPrintScan: PR00019
615-628 LEURICHRPT,Leucine-rich repeat signature

ILLLDLSYNNLSGL

HMMPfam: PF13516
685-700 LRR_6,Leucine Rich repeat

CRDLEVLDIGNNQISG

HMMPfam: PF00560
IPR001611
741-763 LRR_1
Leucine-rich repeat

NLRILDLASNNFSGTLHHKWLKR

Gene3D: G3DSA:3.80.10.10
808-910 G3DSA:3.80.10.10

LRTLVVIDVSDNALHGSIPKSIGELVLLRGLNMSHNALTGPIPSQLGALHELESLDLSSNDLSGEIPQELAQLHFLSVLNLSYNGLVGRIPDSPQFSNNLSYL

FPrintScan: PR00019
856-869 LEURICHRPT,Leucine-rich repeat signature

LHELESLDLSSNDL

HMMPfam: PF13516
859-879 LRR_6,Leucine Rich repeat

LESLDLSSNDLSGEIPQELAQ


List of References

Takuji Sasaki, Takashi Matsumoto, Kimiko Yamamoto, Katsumi Sakata, Tomoya Baba, Yuichi Katayose, Jianzhong Wu, Yoshihito Niimura, Zhukuan Cheng, Yoshiaki Nagamura, Baltazar A Antonio, Hiroyuki Kanamori, Satomi Hosokawa, Masatoshi Masukawa, Koji Arikawa, Yoshino Chiden, Mika Hayashi, Masako Okamoto, Tsuyu Ando, Hiroyoshi Aoki, Kohei Arita, Masao Hamada, Chizuko Harada, Saori Hijishita, Mikiko Honda, Yoko Ichikawa, Atsuko Idonuma, Masumi Iijima, Michiko Ikeda, Maiko Ikeno, Sachie Ito, Tomoko Ito, Yuichi Ito, Yukiyo Ito, Aki Iwabuchi, Kozue Kamiya, Wataru Karasawa, Satoshi Katagiri, Ari Kikuta, Noriko Kobayashi, Izumi Kono, Kayo Machita, Tomoko Maehara, Hiroshi Mizuno, Tatsumi Mizubayashi, Yoshiyuki Mukai, Hideki Nagasaki, Marina Nakashima, Yuko Nakama, Yumi Nakamichi, Mari Nakamura, Nobukazu Namiki, Manami Negishi, Isamu Ohta, Nozomi Ono, Shoko Saji, Kumiko Sakai, Michie Shibata, Takanori Shimokawa, Ayahiko Shomura, Jianyu Song, Yuka Takazaki, Kimihiro Terasawa, Kumiko Tsuji, Kazunori Waki, Harumi Yamagata, Hiroko Yamane, Shoji Yoshiki, Rie Yoshihara, Kazuko Yukawa, Huisun Zhong, Hisakazu Iwama, Toshinori Endo, Hidetaka Ito, Jang Ho Hahn, Ho-Il Kim, Moo-Young Eun, Masahiro Yano, Jiming Jiang, Takashi Gojobori
The genome sequence and structure of rice chromosome 1.
Nature: 2002, 420(6913);312-6
PubMed:12447438 WorldCat.org DOI (P p)





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Analyses

Blast

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