PRGDB00048322 (NBS-LRR type disease resistance protein)
| NBS-LRR type disease resistance protein | |
|---|---|
| Gene Type | Putative_R-Genes,_collected_from_NCBI_Protein |
| GenBank | 152143326 (EF687661) |
| Gene Class | NL |
| Domain Type | NBS, LRR, Others |
| Gene Species | Ipomoea batatas |
DNA Sequence
GGTGGGGTTGGGAAGACAACTTTGGTGAAGCATATACATAATCGAATCCTCCAAAAAATGCCCCATGTTAAAGTTTACTGGGTCACAGTTTCTCAAGATTTTAGCATAAAAAAGTTGCAAGATGACATTGCCAAAATTGCGAGGCTTCAATTTCTTGACGAGAATGAAGAGCAAAGAGCAACCATTTTACACCAACACTTAGTGGGGAAGAAAACTATACTCATATTGGATGATGTGTGGAAATGCATTCACTTGGAGAAATTGGGTAGCCCTCATAGGATTGAAGGATGCAAGTTCATTATAACTTCTCGCTCACTAGAAGTGTGTCGCCAAATGGAGTGCCAAGAATTATTCAAAGTCAAAACTCTTAATGAAAATGAAGCTTGGGATTTATTCAAAGAGAATTTATTACTTCATGGTCATACAGTGCTCACCGAAGATATTGAAAAAAAAGCCAAAAAATTGGCCAAAAAGTGTGGCGGCTTACCATTGGCACTCAACACAGTAGCGGCAAGCATGCGAGGGGTGAATGATGGTCACATCTGGAGCAATGCCATTAAGAATTTCCGAAATTCTTCTCTTCAAATGGAAGACTTGGAAAATAATGTATTTGAAATACTCAAATTTAGCTACAACAGATTGACTGATCCAAGTTTGAAAGAGTGTTTCCTTTATTGTTGTTTGTATCCTGATGATGCTCAAATTAAGAAGGATGAAATAATAATAAAGTTCATTGCAGAAGGATTATGTGGAGATATAGACGAGGGTCATTCCATATTGAAAAAACTAGTAGACGTTTTCTTATTGGAAGGGGGAGAATGGTATGTTAAGATGCATGATTTAATGAGAGAAATGGCTTTAAAGATTTCAAAGTTCATGGTTAAATTTGAGCTCGTTGAAATTCCAGAGGAGAACATTGGACCGTTGAATTGGAGAGAGTTTCCTTGA
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| NBS-LRR type disease resistance protein | NBS-LRR type disease resistance protein [Ipomoea batatas]. | GGVGKTTLVKHIHNRILQKMPHVKVYWVTVSQDFSIKKLQDDIAKIARLQFLDENEEQRATILHQHLVGKKTILILDDVWKCIHLEKLGSPHRIEGCKFIITSRSLEVCRQMECQELFKVKTLNENEAWDLFKENLLLHGHTVLTEDIEKKAKKLAKKCGGLPLALNTVAASMRGVNDGHIWSNAIKNFRNSSLQMEDLENNVFEILKFSYNRLTDPSLKECFLYCCLYPDDAQIKKDEIIIKFIAEGLCGDIDEGHSILKKLVDVFLLEGGEWYVKMHDLMREMALKISKFMVKFELVEIPEENIGPLNWREFP |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| superfamily: SSF52540 | 1-195 | SSF52540 | GGVGKTTLVKHIHNRILQKMPHVKVYWVTVSQDFSIKKLQDDIAKIARLQFLDENEEQRATILHQHLVGKKTILILDDVWKCIHLEKLGSPHRIEGCKFIITSRSLEVCRQMECQELFKVKTLNENEAWDLFKENLLLHGHTVLTEDIEKKAKKLAKKCGGLPLALNTVAASMRGVNDGHIWSNAIKNFRNSSLQ |
| HMMPanther: PTHR11017 | 1-289 | PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN | GGVGKTTLVKHIHNRILQKMPHVKVYWVTVSQDFSIKKLQDDIAKIARLQFLDENEEQRATILHQHLVGKKTILILDDVWKCIHLEKLGSPHRIEGCKFIITSRSLEVCRQMECQELFKVKTLNENEAWDLFKENLLLHGHTVLTEDIEKKAKKLAKKCGGLPLALNTVAASMRGVNDGHIWSNAIKNFRNSSLQMEDLENNVFEILKFSYNRLTDPSLKECFLYCCLYPDDAQIKKDEIIIKFIAEGLCGDIDEGHSILKKLVDVFLLEGGEWYVKMHDLMREMALKI |
| HMMPanther: PTHR11017:SF20 | 1-289 | PTHR11017:SF20,SUBFAMILY NOT NAMED | GGVGKTTLVKHIHNRILQKMPHVKVYWVTVSQDFSIKKLQDDIAKIARLQFLDENEEQRATILHQHLVGKKTILILDDVWKCIHLEKLGSPHRIEGCKFIITSRSLEVCRQMECQELFKVKTLNENEAWDLFKENLLLHGHTVLTEDIEKKAKKLAKKCGGLPLALNTVAASMRGVNDGHIWSNAIKNFRNSSLQMEDLENNVFEILKFSYNRLTDPSLKECFLYCCLYPDDAQIKKDEIIIKFIAEGLCGDIDEGHSILKKLVDVFLLEGGEWYVKMHDLMREMALKI |
| HMMPfam: PF00931 IPR002182
|
1-250 | NB-ARC,NBS NB-ARC
|
GGVGKTTLVKHIHNRILQKMPHVKVYWVTVSQDFSIKKLQDDIAKIARLQFLDENEEQRATILHQHLVGKKTILILDDVWKCIHLEKLGSPHRIEGCKFIITSRSLEVCRQMECQELFKVKTLNENEAWDLFKENLLLHGHTVLTEDIEKKAKKLAKKCGGLPLALNTVAASMRGVNDGHIWSNAIKNFRNSSLQMEDLENNVFEILKFSYNRLTDPSLKECFLYCCLYPDDAQIKKDEIIIKFIAEGLC |
| Gene3D: G3DSA:3.40.50.300 | 2-82 | G3DSA:3.40.50.300 | GVGKTTLVKHIHNRILQKMPHVKVYWVTVSQDFSIKKLQDDIAKIARLQFLDENEEQRATILHQHLVGKKTILILDDVWKC |
| FPrintScan: PR00364 IPR000767
|
66-80 | DISEASERSIST Disease resistance protein
|
HLVGKKTILILDDVW |
| FPrintScan: PR00364 IPR000767
|
159-173 | DISEASERSIST Disease resistance protein
|
CGGLPLALNTVAASM |
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