PRGDB00048322 (NBS-LRR type disease resistance protein)

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NBS-LRR type disease resistance protein
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 152143326 (EF687661)
Gene Class NL
Domain Type NBS, LRR, Others
Gene Species Ipomoea batatas

Comment?

Ipomoea batatas clone AB-02 NBS-LRR type disease resistance protein gene, partial cds.

DNA Sequence

GGTGGGGTTGGGAAGACAACTTTGGTGAAGCATATACATAATCGAATCCTCCAAAAAATGCCCCATGTTAAAGTTTACTGGGTCACAGTTTCTCAAGATTTTAGCATAAAAAAGTTGCAAGATGACATTGCCAAAATTGCGAGGCTTCAATTTCTTGACGAGAATGAAGAGCAAAGAGCAACCATTTTACACCAACACTTAGTGGGGAAGAAAACTATACTCATATTGGATGATGTGTGGAAATGCATTCACTTGGAGAAATTGGGTAGCCCTCATAGGATTGAAGGATGCAAGTTCATTATAACTTCTCGCTCACTAGAAGTGTGTCGCCAAATGGAGTGCCAAGAATTATTCAAAGTCAAAACTCTTAATGAAAATGAAGCTTGGGATTTATTCAAAGAGAATTTATTACTTCATGGTCATACAGTGCTCACCGAAGATATTGAAAAAAAAGCCAAAAAATTGGCCAAAAAGTGTGGCGGCTTACCATTGGCACTCAACACAGTAGCGGCAAGCATGCGAGGGGTGAATGATGGTCACATCTGGAGCAATGCCATTAAGAATTTCCGAAATTCTTCTCTTCAAATGGAAGACTTGGAAAATAATGTATTTGAAATACTCAAATTTAGCTACAACAGATTGACTGATCCAAGTTTGAAAGAGTGTTTCCTTTATTGTTGTTTGTATCCTGATGATGCTCAAATTAAGAAGGATGAAATAATAATAAAGTTCATTGCAGAAGGATTATGTGGAGATATAGACGAGGGTCATTCCATATTGAAAAAACTAGTAGACGTTTTCTTATTGGAAGGGGGAGAATGGTATGTTAAGATGCATGATTTAATGAGAGAAATGGCTTTAAAGATTTCAAAGTTCATGGTTAAATTTGAGCTCGTTGAAATTCCAGAGGAGAACATTGGACCGTTGAATTGGAGAGAGTTTCCTTGA


Protein sequences

Name Description Sequence
NBS-LRR type disease resistance protein NBS-LRR type disease resistance protein [Ipomoea batatas].

GGVGKTTLVKHIHNRILQKMPHVKVYWVTVSQDFSIKKLQDDIAKIARLQFLDENEEQRATILHQHLVGKKTILILDDVWKCIHLEKLGSPHRIEGCKFIITSRSLEVCRQMECQELFKVKTLNENEAWDLFKENLLLHGHTVLTEDIEKKAKKLAKKCGGLPLALNTVAASMRGVNDGHIWSNAIKNFRNSSLQMEDLENNVFEILKFSYNRLTDPSLKECFLYCCLYPDDAQIKKDEIIIKFIAEGLCGDIDEGHSILKKLVDVFLLEGGEWYVKMHDLMREMALKISKFMVKFELVEIPEENIGPLNWREFP

Domains

Domain Start-End Description Sequence

superfamily: SSF52540
1-195 SSF52540

GGVGKTTLVKHIHNRILQKMPHVKVYWVTVSQDFSIKKLQDDIAKIARLQFLDENEEQRATILHQHLVGKKTILILDDVWKCIHLEKLGSPHRIEGCKFIITSRSLEVCRQMECQELFKVKTLNENEAWDLFKENLLLHGHTVLTEDIEKKAKKLAKKCGGLPLALNTVAASMRGVNDGHIWSNAIKNFRNSSLQ

HMMPanther: PTHR11017
1-289 PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

GGVGKTTLVKHIHNRILQKMPHVKVYWVTVSQDFSIKKLQDDIAKIARLQFLDENEEQRATILHQHLVGKKTILILDDVWKCIHLEKLGSPHRIEGCKFIITSRSLEVCRQMECQELFKVKTLNENEAWDLFKENLLLHGHTVLTEDIEKKAKKLAKKCGGLPLALNTVAASMRGVNDGHIWSNAIKNFRNSSLQMEDLENNVFEILKFSYNRLTDPSLKECFLYCCLYPDDAQIKKDEIIIKFIAEGLCGDIDEGHSILKKLVDVFLLEGGEWYVKMHDLMREMALKI

HMMPanther: PTHR11017:SF20
1-289 PTHR11017:SF20,SUBFAMILY NOT NAMED

GGVGKTTLVKHIHNRILQKMPHVKVYWVTVSQDFSIKKLQDDIAKIARLQFLDENEEQRATILHQHLVGKKTILILDDVWKCIHLEKLGSPHRIEGCKFIITSRSLEVCRQMECQELFKVKTLNENEAWDLFKENLLLHGHTVLTEDIEKKAKKLAKKCGGLPLALNTVAASMRGVNDGHIWSNAIKNFRNSSLQMEDLENNVFEILKFSYNRLTDPSLKECFLYCCLYPDDAQIKKDEIIIKFIAEGLCGDIDEGHSILKKLVDVFLLEGGEWYVKMHDLMREMALKI

HMMPfam: PF00931
IPR002182
1-250 NB-ARC,NBS
NB-ARC

GGVGKTTLVKHIHNRILQKMPHVKVYWVTVSQDFSIKKLQDDIAKIARLQFLDENEEQRATILHQHLVGKKTILILDDVWKCIHLEKLGSPHRIEGCKFIITSRSLEVCRQMECQELFKVKTLNENEAWDLFKENLLLHGHTVLTEDIEKKAKKLAKKCGGLPLALNTVAASMRGVNDGHIWSNAIKNFRNSSLQMEDLENNVFEILKFSYNRLTDPSLKECFLYCCLYPDDAQIKKDEIIIKFIAEGLC

Gene3D: G3DSA:3.40.50.300
2-82 G3DSA:3.40.50.300

GVGKTTLVKHIHNRILQKMPHVKVYWVTVSQDFSIKKLQDDIAKIARLQFLDENEEQRATILHQHLVGKKTILILDDVWKC

FPrintScan: PR00364
IPR000767
66-80 DISEASERSIST
Disease resistance protein

HLVGKKTILILDDVW

FPrintScan: PR00364
IPR000767
159-173 DISEASERSIST
Disease resistance protein

CGGLPLALNTVAASM






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Analyses

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