PRGDB00048323 (NBS-LRR type disease resistance protein)

From PRG Wiki
Jump to: navigation, search
NBS-LRR type disease resistance protein
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 152143324 (EF687660)
Gene Class NL
Domain Type NBS, LRR, Others
Gene Species Ipomoea batatas

Comment?

Ipomoea batatas clone 169-02 NBS-LRR type disease resistance protein gene, partial cds.

DNA Sequence

GGTGGGGTTGGGAAGACAACATTGGTGAAGCATATACATAATCAAATCCTCCAAAAAATGTCTGGTGTTAAAGTTTACTGGGTTACAGTTTCTCAAGATTTTAGCATCAAAAAGTTGCAAGATGACATTGCCAAAAAAATTGGAGGGCTTGAATTTGTTGATGAAGATGAAGACCAAAGAGCTGCTATTTTACACAAACACTTAGTGGGGAAAAAAACTGTGCTCATATTGGATGATGTGTGGAAGTCCATTCCATTAGAGAAATTGGGTAACCCTCATAGGATTGAAGGATGCAAGTTCATTATAACTTCTCGCTCACTAGGAGTGTGTCACCAGATTGGGTGCCAAGAATTGTTCAAAGTCAAAACTCTTAATGAAAATGAAGCTTGGGATTTGTTCAAAGAGAATTTATTACTTCATGGTCATACAGTGCTCACCGAAGATATTGAAAAACATGCCAAAGAATTGGCCAAAAAGTGTGGGGGCTTACCATTGGCACTCAACACTGTAGCTGGAAGCATGCGAGGGGTGAATGATAATCACATCTGGAGGAATGCCATTAATAAGTTCCATAGTGACTCTCTTCAATTGGAAGACTTGGAAAATAATGTGTTTGAACTACTCAAATTTAGCTACGACAGATTGACTGATCCAAGTTTGAAAGAGTGTTTCCTTAATTGTTGTTTGTATCCTGAAGATTATGATATTAAGAAGGATGAAATAATAATGAGGTTGATTGCAGAAGGATTATGCGAAGATATAGACGAGGGTCATTCAATATTGAAAAAACTAGTAGACGTTTTCTTATTGGAAGGTAATGAATGGTGTGTTAAGATGCATGATCTAATGAGAGAAATGGCTTTAAAGATTTCAAAGTTCATGGTTAAATCTGAGCTCGTTGAAATTCCAGAGGAGAAACATTGGACCGCTGAATTGGAAAGAGTTTCCTTGAATTCATGTACATTGAAAGAAATTCCAAATGACTTTTCCCCAG


Protein sequences

Name Description Sequence
NBS-LRR type disease resistance protein NBS-LRR type disease resistance protein [Ipomoea batatas].

GGVGKTTLVKHIHNQILQKMSGVKVYWVTVSQDFSIKKLQDDIAKKIGGLEFVDEDEDQRAAILHKHLVGKKTVLILDDVWKSIPLEKLGNPHRIEGCKFIITSRSLGVCHQIGCQELFKVKTLNENEAWDLFKENLLLHGHTVLTEDIEKHAKELAKKCGGLPLALNTVAGSMRGVNDNHIWRNAINKFHSDSLQLEDLENNVFELLKFSYDRLTDPSLKECFLNCCLYPEDYDIKKDEIIMRLIAEGLCEDIDEGHSILKKLVDVFLLEGNEWCVKMHDLMREMALKISKFMVKSELVEIPEEKHWTAELERVSLNSCTLKEIPNDFSP

Domains

Domain Start-End Description Sequence

superfamily: SSF52540
1-196 SSF52540

GGVGKTTLVKHIHNQILQKMSGVKVYWVTVSQDFSIKKLQDDIAKKIGGLEFVDEDEDQRAAILHKHLVGKKTVLILDDVWKSIPLEKLGNPHRIEGCKFIITSRSLGVCHQIGCQELFKVKTLNENEAWDLFKENLLLHGHTVLTEDIEKHAKELAKKCGGLPLALNTVAGSMRGVNDNHIWRNAINKFHSDSLQ

HMMPfam: PF00931
IPR002182
1-253 NB-ARC,NBS
NB-ARC

GGVGKTTLVKHIHNQILQKMSGVKVYWVTVSQDFSIKKLQDDIAKKIGGLEFVDEDEDQRAAILHKHLVGKKTVLILDDVWKSIPLEKLGNPHRIEGCKFIITSRSLGVCHQIGCQELFKVKTLNENEAWDLFKENLLLHGHTVLTEDIEKHAKELAKKCGGLPLALNTVAGSMRGVNDNHIWRNAINKFHSDSLQLEDLENNVFELLKFSYDRLTDPSLKECFLNCCLYPEDYDIKKDEIIMRLIAEGLCED

HMMPanther: PTHR11017:SF20
1-290 PTHR11017:SF20,SUBFAMILY NOT NAMED

GGVGKTTLVKHIHNQILQKMSGVKVYWVTVSQDFSIKKLQDDIAKKIGGLEFVDEDEDQRAAILHKHLVGKKTVLILDDVWKSIPLEKLGNPHRIEGCKFIITSRSLGVCHQIGCQELFKVKTLNENEAWDLFKENLLLHGHTVLTEDIEKHAKELAKKCGGLPLALNTVAGSMRGVNDNHIWRNAINKFHSDSLQLEDLENNVFELLKFSYDRLTDPSLKECFLNCCLYPEDYDIKKDEIIMRLIAEGLCEDIDEGHSILKKLVDVFLLEGNEWCVKMHDLMREMALKI

HMMPanther: PTHR11017
1-290 PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

GGVGKTTLVKHIHNQILQKMSGVKVYWVTVSQDFSIKKLQDDIAKKIGGLEFVDEDEDQRAAILHKHLVGKKTVLILDDVWKSIPLEKLGNPHRIEGCKFIITSRSLGVCHQIGCQELFKVKTLNENEAWDLFKENLLLHGHTVLTEDIEKHAKELAKKCGGLPLALNTVAGSMRGVNDNHIWRNAINKFHSDSLQLEDLENNVFELLKFSYDRLTDPSLKECFLNCCLYPEDYDIKKDEIIMRLIAEGLCEDIDEGHSILKKLVDVFLLEGNEWCVKMHDLMREMALKI

Gene3D: G3DSA:3.40.50.300
2-82 G3DSA:3.40.50.300

GVGKTTLVKHIHNQILQKMSGVKVYWVTVSQDFSIKKLQDDIAKKIGGLEFVDEDEDQRAAILHKHLVGKKTVLILDDVWK

FPrintScan: PR00364
IPR000767
67-81 DISEASERSIST
Disease resistance protein

HLVGKKTVLILDDVW

FPrintScan: PR00364
IPR000767
160-174 DISEASERSIST
Disease resistance protein

CGGLPLALNTVAGSM






List of Contributions

There has not been any contribution yet.


Analyses

Blast

Blast matches against Reference R-Genes. Show


Personal tools
Namespaces

Variants
Actions
PRGDB
META-SPECIES
Wiki
Toolbox