PRGDB00048325 (NBS-LRR type disease resistance protein)

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NBS-LRR type disease resistance protein
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 149929303 (EF641124)
Gene Class NL
Domain Type NBS, LRR, Others
Gene Species Ipomoea batatas

Comment?

Ipomoea batatas clone 16-01 NBS-LRR type disease resistance protein gene, partial cds.

DNA Sequence

GGTGGGGTTGGGAAGACAGCTCTCAGCAAAGTAGTTTATGATGATCCTTCTATAGAGGATCACTTTTATATCCATGCTTGGATAGCTATATCTCAAGGGTATGATGTAAGAAAAATGTTGCTTGGCATTTTGAACAGTGTTTCCCATTGCAAAGTTGAAATGTACGAAAAGAGCAATGAGCAATTAGCTGAACAACTCTATCGAAGCTTGAAAGGGAGAAGGTATCTCATTGTTTTGGATGACATATGGGATATAGAAGCATGGAATGATGTTAGAAGATCTTTCCCAGATGACAATAATGGCAGCCGGATCATTTTCACTAGTCGGTATACAAGCATTGCCATCCATGTCTATAATAGGAGTCTTACTCTTGACATGCATCTTTTAAACATGGACCAAAGTTTGAAGTTACTATCTTTGAAGGTGTTTGGAACTGAATCTTTCCCCCAAGAACTGGAGAACTTTGGAAAACAAATTGTAGGCAAATGTCAAGGATTGCCACTAGCGTGG


Protein sequences

Name Description Sequence
NBS-LRR type disease resistance protein NBS-LRR type disease resistance protein [Ipomoea batatas].

GGVGKTALSKVVYDDPSIEDHFYIHAWIAISQGYDVRKMLLGILNSVSHCKVEMYEKSNEQLAEQLYRSLKGRRYLIVLDDIWDIEAWNDVRRSFPDDNNGSRIIFTSRYTSIAIHVYNRSLTLDMHLLNMDQSLKLLSLKVFGTESFPQELENFGKQIVGKCQGLPLAW

Domains

Domain Start-End Description Sequence

HMMPanther: PTHR11017:SF20
1-169 PTHR11017:SF20,SUBFAMILY NOT NAMED

GGVGKTALSKVVYDDPSIEDHFYIHAWIAISQGYDVRKMLLGILNSVSHCKVEMYEKSNEQLAEQLYRSLKGRRYLIVLDDIWDIEAWNDVRRSFPDDNNGSRIIFTSRYTSIAIHVYNRSLTLDMHLLNMDQSLKLLSLKVFGTESFPQELENFGKQIVGKCQGLPLA

superfamily: SSF52540
1-170 SSF52540

GGVGKTALSKVVYDDPSIEDHFYIHAWIAISQGYDVRKMLLGILNSVSHCKVEMYEKSNEQLAEQLYRSLKGRRYLIVLDDIWDIEAWNDVRRSFPDDNNGSRIIFTSRYTSIAIHVYNRSLTLDMHLLNMDQSLKLLSLKVFGTESFPQELENFGKQIVGKCQGLPLAW

HMMPfam: PF00931
IPR002182
1-169 NB-ARC,NBS
NB-ARC

GGVGKTALSKVVYDDPSIEDHFYIHAWIAISQGYDVRKMLLGILNSVSHCKVEMYEKSNEQLAEQLYRSLKGRRYLIVLDDIWDIEAWNDVRRSFPDDNNGSRIIFTSRYTSIAIHVYNRSLTLDMHLLNMDQSLKLLSLKVFGTESFPQELENFGKQIVGKCQGLPLA

HMMPanther: PTHR11017
1-169 PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

GGVGKTALSKVVYDDPSIEDHFYIHAWIAISQGYDVRKMLLGILNSVSHCKVEMYEKSNEQLAEQLYRSLKGRRYLIVLDDIWDIEAWNDVRRSFPDDNNGSRIIFTSRYTSIAIHVYNRSLTLDMHLLNMDQSLKLLSLKVFGTESFPQELENFGKQIVGKCQGLPLA

FPrintScan: PR00364
IPR000767
69-83 DISEASERSIST
Disease resistance protein

SLKGRRYLIVLDDIW

FPrintScan: PR00364
IPR000767
163-170 DISEASERSIST
Disease resistance protein

CQGLPLAW






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Analyses

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