PRGDB00048330 (NBS-LRR type disease resistance protein)

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NBS-LRR type disease resistance protein
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 149929288 (EF641114)
Gene Class N
Domain Type NBS, Others
Gene Species Ipomoea batatas

Comment?

Ipomoea batatas clone 37-01 NBS-LRR type disease resistance protein gene, partial cds.

DNA Sequence

GGTGGGGTTGGGAAGACAGCTCTCATCATAGGAGTTTATGATGATGCTTTTATCGAGCGCTACTTTTATATCCCAGGTTGGAAAGCGGTATATCAAGGGTATGAGGTAAGAAAAATTTTGCTTGGCATATTGAACAGGGTTTCCGATTCACTCCTTGAAGTGTACGTCCGAAGCAATGATCAATTAGCTGAACAACTGTACCGGAGCTTGAAAGGGAGAAGGTATCTCATTGTTTTGGATGACATATGGGATATGATTGCATGGATTGTCCGAAGGATATCTTTCCCTTACGACAATAATGGCAGACGGATCATTTTCACTAGGCGGGATACCTGCATTTCATGCCATGATTATAATAGGACTCTTACTCCTGACATGCATCTGTTAAACATAGACCAAAGTTTGAAATTACTATCGTTGAAGGTTGCTATGTGGGAATCTTTCCCTGCGGAACTCGAGAACTACATACCACAAATTGCAGGCAAATGTCAAGGATTGCCACTAGCGTGG


Protein sequences

Name Description Sequence
NBS-LRR type disease resistance protein NBS-LRR type disease resistance protein [Ipomoea batatas].

GGVGKTALIIGVYDDAFIERYFYIPGWKAVYQGYEVRKILLGILNRVSDSLLEVYVRSNDQLAEQLYRSLKGRRYLIVLDDIWDMIAWIVRRISFPYDNNGRRIIFTRRDTCISCHDYNRTLTPDMHLLNIDQSLKLLSLKVAMWESFPAELENYIPQIAGKCQGLPLAW

Domains

Domain Start-End Description Sequence

superfamily: SSF52540
1-170 SSF52540

GGVGKTALIIGVYDDAFIERYFYIPGWKAVYQGYEVRKILLGILNRVSDSLLEVYVRSNDQLAEQLYRSLKGRRYLIVLDDIWDMIAWIVRRISFPYDNNGRRIIFTRRDTCISCHDYNRTLTPDMHLLNIDQSLKLLSLKVAMWESFPAELENYIPQIAGKCQGLPLAW

HMMPfam: PF00931
IPR002182
1-169 NB-ARC,NBS
NB-ARC

GGVGKTALIIGVYDDAFIERYFYIPGWKAVYQGYEVRKILLGILNRVSDSLLEVYVRSNDQLAEQLYRSLKGRRYLIVLDDIWDMIAWIVRRISFPYDNNGRRIIFTRRDTCISCHDYNRTLTPDMHLLNIDQSLKLLSLKVAMWESFPAELENYIPQIAGKCQGLPLA

FPrintScan: PR00364
IPR000767
69-83 DISEASERSIST
Disease resistance protein

SLKGRRYLIVLDDIW

FPrintScan: PR00364
IPR000767
163-170 DISEASERSIST
Disease resistance protein

CQGLPLAW






List of Contributions

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Analyses

Blast

Blast matches against Reference R-Genes. Show


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