PRGDB00048333 (putative disease resistence protein)

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putative disease resistence protein
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 142942512 (EF514213)
Gene Class NL
Domain Type LRR, NBS, Others
Gene Species Solanum tuberosum

Comment?

Solanum tuberosum strain P6/210 contig r1, complete sequence.

DNA Sequence

ATGTATTTCAACAATGAATTGTCTGATCTGAAAGATTGTCTCCTTAGCGTGCTGCAAGATAAATTTTCCTCGGATGTTGGAGGGGGTCGAATAAATTTCTTTCTATGGGACTTAAAATTTGTTGATTGTTTTCTCTATTTGAAAAGCTTCCCTTTTGCAAGTGAATGCGGTATGCTAAATGTCTCTCAGAAAATGATAGAATTTTGGAAAAGTGAGTATACTAGAATACTTACCATTTGTCACGATTCAGGAACACAATACAGGAACAAGAACGTACGTATGAGGAGTCTGTATCTTGAAAAAGTTTGGGTTGCTTTTAAATCATTTGCCTACTGGAAGGAGGTAATTTGGAAGACTAAACAAGAATTCAGAGCCGAATACTCCTTTCCGAAAACATCACTTGCAGCCAACAAGGTGGATGATGTTAATACGCATAGCCCCAAATTTGTGATGGAAGTCATCGATGTTTTTGTGGAGAACCTCAATGATCTAATGAAGATCAATGATCCATCTTCGTGGCTTTTTGTTCCAGGACACATGAAGGAACAAATAGAAAAAGTGTTAAAGGAATTGAAGTTATTGAGATTTTTTGTCTGCTTTGTTTCTAACAAATGTATAGAGCCTCAATACCAACATACTACTTTTTATACTCGCGCTTTAATTGAGGCTAGCCACAACGCAATGGTTGTGTGGTTGTATTTGCCAGTCTATGGCAACGGAAATCAAGACTTGGCTCCAACTGAAGTCAGTCGCTTGCTTTCTGATTTCATGGAAATGAAGATTAAGTCCATTGAGCCAGGCATCAGCCGCAACAGTATTTATATTGATGTCCTGCAAGCTTTGAAGTCCACCATACCACAAGCTCAAAAGAAGCATGTGGATATTCCAACACACAGTCTGACGGTTGGTTTGAGTGATCAAATGGCTAACCTTCAGGAGATGCTCTGCCTTCTAAGAGACAATCTCATTCATCTGCCAATACTAGATCTGGAATTTCATCTTCAAGATATGGATTCTGTTATTGTTGATGCCGGACTTCTTATTTACTCATTATATGATATTAAGGGGGAGAAGGAAGACACAATATTGGAGGATATCAATCGGGAGCTTGGTTTTGATCTTCCCAGAAACATTGAGCCTATCAAGGTGATGGTCTACCTCGTCATGCAAAAGGCATTTCAATGTAACTTGCCAAGGATTCATGGACTAGGCTATGTCGATTTTCTATTGAAAAACCTGAAGGATTTCCAAGGCCGTTATTCAGATTCACTTGCCTTCCTCAAGAATCAACTTCAAGTAATTCAAACGAAATTTGAGAGCATGCAACCTTTCTTGAAGGTTGTCGTAGAAGAGCCACACAATAAGCTCAAGACACTGAATGAAGATTGTGCTACACAGATAATTAGGAAGGCATATGAGGTGGAATATGTAGTTGATGCTTGTATAAACAAAGAAGTTCCTCAGTGGTGCATCGAGCGTTGGCTCCTGGATATCATAGAGGAGATTACTTGTATCAAAGCAAAGATTCAGGAAAAGAACACAGTTGAGGATACAATGAAGAGTGTCATTGCATCATCACAATTGGCAAGGACTCCAAGGATGAATGAAGAGATTGTTGGGTTTGAGGATGTCATAGAAACTTTAAGAAAAAAACTACTGAATGGAACGAAAGGGCAAGATGTCATTTCAATGCATGGCATGCCAGGTTTAGGTAAGACAACTTTAGCCAACAGACTCTATTCTGATAGGTCAATTGTTTCTCAATTTGATATTTGTGCACAATGTTGTGTGTCTCAAGTATATTCTTATAAGGACTTGTTATTGGCCTTGCTACGTGATGCTATTGGTGAGGGTTCTGTGCGAACAGAACTTCATGCCAATGAATTAGCTGATATGCTTCGCAAAACTTTATTGCCCCGAAGGTACCTTATCCTTGTTGATGACGTGTGGGAAAATAGTGTTTGGGATGATTTAAGTGGTTGTTTCCCAGATGTCAATAACAGAAGCAGAATCATTCTGACGACAAGACATCATGAAGTTGCCAAATATGCTCGTGTTCATAGTGATCCCCTTCATCTTCGTATGTTTGACGAAGATGAAAGTTGGAAGTTGCTTGAAAAGAAAGTGTTTGGTGAACAAAGCTGCTCCCCTCTCCTAAGAGATGTTGGGCAGAGAATAGCAAAAATGTGTGGACAACTACCTCTTTCAATTGTTTTGGTGGCTGGTATTCTGTCAGAGATGGAAAAGGAAGTAGAATGTTGGGAACAAGTGGCCAACAATTTGGGTACCCACATTCACAATGACTCAAGAGCCGTTGTAGACCAAAGCTATCATGTTTTACCCTGTCATCTCAAGTCTTGCTTCCTTTATTTTGGAGCATTTTTAGAGGATAGAGTGATTGACATTTCAAGGTTAATAAGGTTATGGATATCAGAATCATTTATAAAAAGTTGTGAAGGCAGGAGCTTGGAGGATATAGCAGAAGGTTACTTGGAGAATCTTATTGGAAGAAATCTAGTAATGGTTACTCAGAGGGACGATTCAGATGGTAAGGTCAAAGCATGTCGCCTTCATGATGTATTACTCGATTTCTGCAAGGAAAGAGCAGCTGAGGAGAATTTTCTACTATGGATAAATAGGGATCAGATTACCAAACCTTCTTCCTGTGTTTACTCTCACAACCAGCATGCTCACTTGGCCTTCACTGATATGAAGAATCTTGTAGAATGGAGTGCGTCTTGCTCACGTGTTGGCTCTGTACTTTTTAAGAATTACGACCCATACTTTGCTGGTCGTCCCTTATCCTCTCATGCTTTTTCAATTTCACGCATTTTATTAAATTTCAAGTTTCTAAAAGTATTGGATTTGGAGCACCAGGTTGTTATTGATTCTATTCCAACTGAGCTCTTTTACTTGAGGTATATATCTGCACACATTGAACAGAATTCAATTCCTTCAAGCATATCCAATCTTTGGAACCTTGAAACTCTTATATTAAACCGTACATCAGCTGCGACAGGTAAGACGCTATTACTACCTAGTACAGTTTGGGATATGGTTAAATTGAGACATCTGCATATTCCTAAGTTCAGGCCAGAAAATAAAAAAGCATTACTCGAGAACTCTGCAAGACTTGATGATTTGGAAACCCTTTTCAATCCATATTTCACTCGTGTTGAGGATGCAGAATTGATGTTGAGAAAAACACCTAATCTTCGAAAACTGATATGTGAAGTCCAGTGCTTAGAATACCCCCATCAGTACCATGTGCTTAATTTTCCGATAAGGCTTGAAATGCTAAAGCTTCATCAATCAAACATCTTTAAACCCATCTCCTTTTGCATCTCTGCACCAAATCTCAAATACCTAGAACTCTCTGGCTTTTACCTGGATTCTCAGTACTTATCAGAAACTGCTGATCATCTCAAGCACCTTGAGGTACTCAAACTGTACTACGTTGAATTTGGTGATCATAGGGAATGGAAAGTGAGCAATGGCATGTTCCATCAACTCAAAATCTTGAAACTAAAATGTGTGTCCTTGTTGAAATGGATTGTAGCTGATGATGCCTTTCCTAACCTTGAACAATTGGTTTTGCGTGGATGTCGACATCTTATGGAGATCCCTTCTTATTTCATGGACATCCTTTCTCTGCAGTACATCGAGGTAGAAAACTGCAATGAGTCGGTTGTCAAGTCAGCCATGAATATACAAGAAACACAAGTCGAAGATAATCAAAATACTAATTTCAAGCTCGTTCTCATCGAGATTCATCTTTTTTGTCTTTTCGATATGAAAGGGATAGAATCAATTTCAACTGATATGAAAGAGAAGAAACTTACTGTGACCAGAGATGTGGATGCTGATGAAGTTCAATTAGTTGTGGAGAAACTGAGAAACGTGGCATATGCTGATGAAGTTCAATTAGTTGTGGAGAAACTGAGAAAGCGTGGCATGTTCTAA


Protein sequences

Name Description Sequence
putative disease resistance protein putative disease resistance protein [Solanum tuberosum].

MYFNNELSDLKDCLLSVLQDKFSSDVGGGRINFFLWDLKFVDCFLYLKSFPFASECGMLNVSQKMIEFWKSEYTRILTICHDSGTQYRNKNVRMRSLYLEKVWVAFKSFAYWKEVIWKTKQEFRAEYSFPKTSLAANKVDDVNTHSPKFVMEVIDVFVENLNDLMKINDPSSWLFVPGHMKEQIEKVLKELKLLRFFVCFVSNKCIEPQYQHTTFYTRALIEASHNAMVVWLYLPVYGNGNQDLAPTEVSRLLSDFMEMKIKSIEPGISRNSIYIDVLQALKSTIPQAQKKHVDIPTHSLTVGLSDQMANLQEMLCLLRDNLIHLPILDLEFHLQDMDSVIVDAGLLIYSLYDIKGEKEDTILEDINRELGFDLPRNIEPIKVMVYLVMQKAFQCNLPRIHGLGYVDFLLKNLKDFQGRYSDSLAFLKNQLQVIQTKFESMQPFLKVVVEEPHNKLKTLNEDCATQIIRKAYEVEYVVDACINKEVPQWCIERWLLDIIEEITCIKAKIQEKNTVEDTMKSVIASSQLARTPRMNEEIVGFEDVIETLRKKLLNGTKGQDVISMHGMPGLGKTTLANRLYSDRSIVSQFDICAQCCVSQVYSYKDLLLALLRDAIGEGSVRTELHANELADMLRKTLLPRRYLILVDDVWENSVWDDLSGCFPDVNNRSRIILTTRHHEVAKYARVHSDPLHLRMFDEDESWKLLEKKVFGEQSCSPLLRDVGQRIAKMCGQLPLSIVLVAGILSEMEKEVECWEQVANNLGTHIHNDSRAVVDQSYHVLPCHLKSCFLYFGAFLEDRVIDISRLIRLWISESFIKSCEGRSLEDIAEGYLENLIGRNLVMVTQRDDSDGKVKACRLHDVLLDFCKERAAEENFLLWINRDQITKPSSCVYSHNQHAHLAFTDMKNLVEWSASCSRVGSVLFKNYDPYFAGRPLSSHAFSISRILLNFKFLKVLDLEHQVVIDSIPTELFYLRYISAHIEQNSIPSSISNLWNLETLILNRTSAATGKTLLLPSTVWDMVKLRHLHIPKFRPENKKALLENSARLDDLETLFNPYFTRVEDAELMLRKTPNLRKLICEVQCLEYPHQYHVLNFPIRLEMLKLHQSNIFKPISFCISAPNLKYLELSGFYLDSQYLSETADHLKHLEVLKLYYVEFGDHREWKVSNGMFHQLKILKLKCVSLLKWIVADDAFPNLEQLVLRGCRHLMEIPSYFMDILSLQYIEVENCNESVVKSAMNIQETQVEDNQNTNFKLVLIEIHLFCLFDMKGIESISTDMKEKKLTVTRDVDADEVQLVVEKLRNVAYADEVQLVVEKLRKRGMF

Domains

Domain Start-End Description Sequence

HMMPfam: PF12061
IPR021929
112-511 DUF3542
Late blight resistance protein R1

WKEVIWKTKQEFRAEYSFPKTSLAANKVDDVNTHSPKFVMEVIDVFVENLNDLMKINDPSSWLFVPGHMKEQIEKVLKELKLLRFFVCFVSNKCIEPQYQHTTFYTRALIEASHNAMVVWLYLPVYGNGNQDLAPTEVSRLLSDFMEMKIKSIEPGISRNSIYIDVLQALKSTIPQAQKKHVDIPTHSLTVGLSDQMANLQEMLCLLRDNLIHLPILDLEFHLQDMDSVIVDAGLLIYSLYDIKGEKEDTILEDINRELGFDLPRNIEPIKVMVYLVMQKAFQCNLPRIHGLGYVDFLLKNLKDFQGRYSDSLAFLKNQLQVIQTKFESMQPFLKVVVEEPHNKLKTLNEDCATQIIRKAYEVEYVVDACINKEVPQWCIERWLLDIIEEITCIKAKIQE

HMMPanther: PTHR11017
387-880 PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

LVMQKAFQCNLPRIHGLGYVDFLLKNLKDFQGRYSDSLAFLKNQLQVIQTKFESMQPFLKVVVEEPHNKLKTLNEDCATQIIRKAYEVEYVVDACINKEVPQWCIERWLLDIIEEITCIKAKIQEKNTVEDTMKSVIASSQLARTPRMNEEIVGFEDVIETLRKKLLNGTKGQDVISMHGMPGLGKTTLANRLYSDRSIVSQFDICAQCCVSQVYSYKDLLLALLRDAIGEGSVRTELHANELADMLRKTLLPRRYLILVDDVWENSVWDDLSGCFPDVNNRSRIILTTRHHEVAKYARVHSDPLHLRMFDEDESWKLLEKKVFGEQSCSPLLRDVGQRIAKMCGQLPLSIVLVAGILSEMEKEVECWEQVANNLGTHIHNDSRAVVDQSYHVLPCHLKSCFLYFGAFLEDRVIDISRLIRLWISESFIKSCEGRSLEDIAEGYLENLIGRNLVMVTQRDDSDGKVKACRLHDVLLDFCKERAAEENFLLWINR

HMMPanther: PTHR11017:SF126
387-880 PTHR11017:SF126,OS11G0237600 PROTEIN

LVMQKAFQCNLPRIHGLGYVDFLLKNLKDFQGRYSDSLAFLKNQLQVIQTKFESMQPFLKVVVEEPHNKLKTLNEDCATQIIRKAYEVEYVVDACINKEVPQWCIERWLLDIIEEITCIKAKIQEKNTVEDTMKSVIASSQLARTPRMNEEIVGFEDVIETLRKKLLNGTKGQDVISMHGMPGLGKTTLANRLYSDRSIVSQFDICAQCCVSQVYSYKDLLLALLRDAIGEGSVRTELHANELADMLRKTLLPRRYLILVDDVWENSVWDDLSGCFPDVNNRSRIILTTRHHEVAKYARVHSDPLHLRMFDEDESWKLLEKKVFGEQSCSPLLRDVGQRIAKMCGQLPLSIVLVAGILSEMEKEVECWEQVANNLGTHIHNDSRAVVDQSYHVLPCHLKSCFLYFGAFLEDRVIDISRLIRLWISESFIKSCEGRSLEDIAEGYLENLIGRNLVMVTQRDDSDGKVKACRLHDVLLDFCKERAAEENFLLWINR

superfamily: SSF52540
521-768 SSF52540

SVIASSQLARTPRMNEEIVGFEDVIETLRKKLLNGTKGQDVISMHGMPGLGKTTLANRLYSDRSIVSQFDICAQCCVSQVYSYKDLLLALLRDAIGEGSVRTELHANELADMLRKTLLPRRYLILVDDVWENSVWDDLSGCFPDVNNRSRIILTTRHHEVAKYARVHSDPLHLRMFDEDESWKLLEKKVFGEQSCSPLLRDVGQRIAKMCGQLPLSIVLVAGILSEMEKEVECWEQVANNLGTHIHND

Gene3D: G3DSA:3.40.50.300
532-680 G3DSA:3.40.50.300

PRMNEEIVGFEDVIETLRKKLLNGTKGQDVISMHGMPGLGKTTLANRLYSDRSIVSQFDICAQCCVSQVYSYKDLLLALLRDAIGEGSVRTELHANELADMLRKTLLPRRYLILVDDVWENSVWDDLSGCFPDVNNRSRIILTTRHHEV

HMMPfam: PF00931
IPR002182
542-817 NB-ARC,NBS
NB-ARC

EDVIETLRKKLLNGTKGQDVISMHGMPGLGKTTLANRLYSDRSIVSQFDICAQCCVSQVYSYKDLLLALLRDAIGEGSVRTELHANELADMLRKTLLPRRYLILVDDVWENSVWDDLSGCFPDVNNRSRIILTTRHHEVAKYARVHSDPLHLRMFDEDESWKLLEKKVFGEQSCSPLLRDVGQRIAKMCGQLPLSIVLVAGILSEMEKEVECWEQVANNLGTHIHNDSRAVVDQSYHVLPCHLKSCFLYFGAFLEDRVIDISRLIRLWISESFIKS

FPrintScan: PR00364
IPR000767
561-576 DISEASERSIST
Disease resistance protein

VISMHGMPGLGKTTLA

FPrintScan: PR00364
IPR000767
636-650 DISEASERSIST
Disease resistance protein

TLLPRRYLILVDDVW

FPrintScan: PR00364
IPR000767
730-744 DISEASERSIST
Disease resistance protein

CGQLPLSIVLVAGIL

superfamily: SSF52058
856-1232 SSF52058,LRR

RLHDVLLDFCKERAAEENFLLWINRDQITKPSSCVYSHNQHAHLAFTDMKNLVEWSASCSRVGSVLFKNYDPYFAGRPLSSHAFSISRILLNFKFLKVLDLEHQVVIDSIPTELFYLRYISAHIEQNSIPSSISNLWNLETLILNRTSAATGKTLLLPSTVWDMVKLRHLHIPKFRPENKKALLENSARLDDLETLFNPYFTRVEDAELMLRKTPNLRKLICEVQCLEYPHQYHVLNFPIRLEMLKLHQSNIFKPISFCISAPNLKYLELSGFYLDSQYLSETADHLKHLEVLKLYYVEFGDHREWKVSNGMFHQLKILKLKCVSLLKWIVADDAFPNLEQLVLRGCRHLMEIPSYFMDILSLQYIEVENCNESVVK

Gene3D: G3DSA:3.80.10.10
939-1075 G3DSA:3.80.10.10

FSISRILLNFKFLKVLDLEHQVVIDSIPTELFYLRYISAHIEQNSIPSSISNLWNLETLILNRTSAATGKTLLLPSTVWDMVKLRHLHIPKFRPENKKALLENSARLDDLETLFNPYFTRVEDAELMLRKTPNLRKL

Gene3D: G3DSA:3.80.10.10
1095-1228 G3DSA:3.80.10.10

IRLEMLKLHQSNIFKPISFCISAPNLKYLELSGFYLDSQYLSETADHLKHLEVLKLYYVEFGDHREWKVSNGMFHQLKILKLKCVSLLKWIVADDAFPNLEQLVLRGCRHLMEIPSYFMDILSLQYIEVENCNE

FPrintScan: PR00364
IPR000767
1189-1205 DISEASERSIST
Disease resistance protein

DAFPNLEQLVLRGCRHL


List of References

Agim Ballvora, Anika Jöcker, Prisca Viehöver, Hirofumi Ishihara, Jürgen Paal, Khalid Meksem, Rémy Bruggmann, Heiko Schoof, Bernd Weisshaar, Christiane Gebhardt
Comparative sequence analysis of Solanum and Arabidopsis in a hot spot for pathogen resistance on potato chromosome V reveals a patchwork of conserved and rapidly evolving genome segments.
BMC Genomics: 2007, 8();112
PubMed:17474978 WorldCat.org DOI (I e)





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Analyses

Blast

Blast matches against Reference R-Genes. Show


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