PRGDB00048335 (putative disease resistence protein)
putative disease resistence protein | |
---|---|
Gene Type | Putative_R-Genes,_collected_from_NCBI_Protein |
GenBank | 142942512 (EF514213) |
Gene Class | NL |
Domain Type | LRR, NBS, Others |
Gene Species | Solanum tuberosum |
DNA Sequence
ATGTTGTATTTCAACAATGAATTGTCTGCTCTGAAAGATCATCTCCTTAGAAAGCTGCAATATTACACTACCTCGTATGCTGTAAGGGATCGAATAAATTTCATTCTATGGGAGTTAAAATTCCTTGATTGTTTTCTCTATTTGAAAAGGTTACCTTTTGCAAGTGAATGCGGTATGCTAAATGTGTCACAGAAAATGTTAGAAATTTGGAAAAGTCGGTGGAACAAGTTAATTTATATATGTATGTATGATCAAGAAGGTAGTCCTTGGGATGCAATTGTCTACTGGAAGGAGTTAATTTGGCATACTAAGCAAGAATTCAGAGCCCAATACTCCTTTCCGAAATCACCACTTGCAGCCAACGAGGTGATTGATGATGATGATAATACTCATAGCCCCGAATTTGTGATGGAAGTCATCGATGTTTTTGTGGGGAACATCAATGTTCTAGTGAAGATCAATGATCCATGGTCGTGCTTTTTTGTTCCAGGACTCAAGGAACAAATAGAACGAGTGTTAAAGGAGTTGAAGTTATTGAGATTTTTTGTCTGCTTTGTTTCAAACAAATGTATAGAGCCTCAATACCGATGTACTACTTTTTATACTCATGCTTTAATTGAGGCTAGCTATATCGCAATGGTTGTGTGGTTGCATTTGCCAATCTATGGCAGCAGAAATCAAGACTTGGCTCCAAGTGAAGTCAGTCGTTTGCTTTCTGATTTCATGGAAATGAAAATTAAGTCCATTGAGCCAGGCATCAGCCGCAACAGTATTTATATTGATGTCCTGCAAGCTTTGAAGTCCACCATACCACAAGCACAAAAGAAGCATGTGGAGATTCCAACACACAGTCTGACGGTTGGTTTGAGTGATCAAATGGCTAACCTTCAGGAGATGCTCTGCCTTCTAAGAGACAATCTCATTCATCTGCCAATACTAGATCTGGAATTTCATCTTCAAGATATGGATTCTGTTATTGTTGATGCCGGACTTCTTATTTACTCATTATATGATATTAAGGGGGAGAAGGAAGACACAGTATTGGATGATATCAACCGAGCACTTGGTTTTGATCTTCCAAGAAACATTGAGCCGATCAAGGCGATGGTCTACCTTGTCATGCAACAGGCATTTCATTGTAACTTGCCAAGGATTCATGGACTAGGCTATGTCGATTTTCTATTGAAAAATCTGAATGATTTCCAAGGCCGTTATTCAGATTCACTGGCTTTCCTCAAGAATCAGCTTCAAGTAATTCAAATGGAATTTGAGAGCTTGCAACCTTTCCTGAAGGTTGTTGCAGAAGAGCCGCACAATAAGCACAAGACACTGAATGAAGATTGTGCTACACAGATAATTAGGAAAGCATATGAGGTGGAATATGTAGTTGATGCTTGTATTAACAAAGAAGCTCCTCATTGGTGCCTCGAGCGTTGGCTCCTGGATATCATAGAGGAGATTACTTGTATCAAAGCAAAGATTCAGGAAAAGAACACAGTTGAGGATACAATGAAGAGTGTATCACAATTGGCAAGGACTCCAAGGATGAATGAAGAGATTGTTGGGTTTGAGGATGTCATAGAAAATTTAAGAAAAAAACTACTGAATGGACCCAAAGGGCAAGATGTCATTTCAATTCACGGCATGCCAGGTTTAGGTAAGACGACTTTAGCCAACAGACTCTATTCTGACAGGTCAGTTGTTTCTCAATTTGATATTTGTGCACAATGTTGTGTGTCTCAAGTATATTCTTACAAGGACTTGTTATTGGCCTTGCTACGTGATGCTATTGGTGAGGAATCTGAGCGTAGAGAACTGCCTGACAATGAATTAGCTGATATGCTTCGCAAAACTTTATTGCCCCAAAGGTACCTTATACTTGTTGATGACGTGTGGGAAAATAGTGTTTGGGATGATTTAAGAGGTTGTTTTCCAGATGCCAATAACAGAAGCAGAATCATTCTAACAACAAGACATCATGAAGTTGCCAAATATGCTAGTGTTCATAGTGATCCCCTTCATCTTCGTATGTTTGACGAAGATGAAAGTTGGAAGTTGCTTGAAAAGAAAGTGTTTGGTGAAGAAAGCTGTTCCCCTCTCCTAAAAAAATTTGGGCTAAAAATAGCAAAAATGTGTGGACAACTCCCTCTTTCAATTGTTTTGGTGGCTGGTATTCTGTCGGAGATGGAAAAGGAAGTAGAATGTTGGGAACAAGTGGCCAACAATTTGGGTACCCACATTCACAATGACTCAAGAGCCATTGTAGACCAAAGTTATCATGTTTTACCCTGTCATCTTAAGTCTTGCTTCCTTTATTTTGGAGCATTTTTGGAGGATGAAGTGATTTATAGTTCAAGGTTAATAAGGTTATGGATATCAGAAGCATTTATAAAAAGTTGTGAAGGCAGGAGGTTGGAGGATATAGCAGAAGGTTACTTGGAGAATCTTATTGGAAGAAATCTAGTAATGGTTACTCAGAGGGCCGATTCAGATGGTAAGATCAAAGCATGTCGCCTTCATGATGTATTACTCGATTTCTGCAAGAAAAGAGCAGCTGAGGAGAATTTTCTACTATGGATAAATAGGGATCAGATCAGTACCAAAGCTGTTTACTCTCACAAGCAGCATGCTCACTTGGCCTTCACTGAAATGGATAATCTTGTTGAATGGAGTGCGTCTTGTTCACTTGTTGGCTCTGTACTTTTTAAGAATCCTGACTCATACTCTCCTGCTTTTTCAATTTCACCCATTTTATTAAATTTTAAGTTTCTAAAAGTATTGGATTTGGAGCACCGGGTTGTTATTGATTTTATTCCAACTGAGCTCTTTTATTTGAGGTATTTATCTGCATCCATTGATCAGAATTCAATTCCTTCAAGCATATCCAATCTTTGGAACCTTGAAACTCTTATATTAAAGAGTACACCAGTTGGGAGACATAACACGCTATTACTACCTAGTACAATTTGGGATATGGTTAAATTGAGACATCTGCATATTCCTATATTCCGTCCAGAAAATGAAGAAGCATTACTTGAGAACTCTGCAAGACTTTATGATTTGGAAACCATTTCCACTCCATATTTCTCTAGTGTTGAGGATGCAGAATTGATTCTGAGAAAAATACCTAATCTTCGAAAACTGATATGTGAAGTTGAATGTTTAGAATACCCTCCTCAGTACCATGTGTTAAATTTTCCAATACGGCTTGAAATACTAAAGCTTTATCGATCAAAAGCCTTTAAAACCATCTCCTTTTGCATCTCTGCACCAAATCTCAAATACCTAGAACTCTCTGGCTTTTACATGGATTCTCAATACTTATCAGAAACTGCTGATCATCTCAAGCACCTTGAGGTACTCAAACTGTACTACTTTGCATTTGGTGATCATATGGAATGGAAAGTGAGCAATGGCATGTTCCCTCAACTCAAAATCTTGAAACTAAAATGTGTGTCCTTGAAGAAATGGATTGTAGCTGATGATGCCTTTCCTAACCTTGAACAATTGGTTTTGTGTGGATGTCAAGATCTTAAGGAGATCCCTTCTTGTTTGATGGACATCCTTTCTCTCAAGTACATCGAGGTAGAAAACTGCAATGAGTCGGTTGTCAAGTCAGCCATGAATATACAAGAAACACAAGTCGAAGATTATCAAAATACTAATTTCAAGCTCGTTCTCATCAAGATTCATCTTTTTTGTCTTTTCGATATGAAAGGGATAGAATCAGTTTCATCTGATGAGAAAGAGAAGAAACTTACTGTGACCGGAGATGTGGATGCTGATGAAGGTCAATTAGTTGTGGAGAAACTGAGAAAGCGTGGCATGCCAGGGTTTAAGTTACTTATAAGAATTCAGAACATACGAAAGGTGTACAACTTTTAA
Protein sequences
Name | Description | Sequence |
---|---|---|
putative disease resistance protein | putative disease resistance protein [Solanum tuberosum]. | MLYFNNELSALKDHLLRKLQYYTTSYAVRDRINFILWELKFLDCFLYLKRLPFASECGMLNVSQKMLEIWKSRWNKLIYICMYDQEGSPWDAIVYWKELIWHTKQEFRAQYSFPKSPLAANEVIDDDDNTHSPEFVMEVIDVFVGNINVLVKINDPWSCFFVPGLKEQIERVLKELKLLRFFVCFVSNKCIEPQYRCTTFYTHALIEASYIAMVVWLHLPIYGSRNQDLAPSEVSRLLSDFMEMKIKSIEPGISRNSIYIDVLQALKSTIPQAQKKHVEIPTHSLTVGLSDQMANLQEMLCLLRDNLIHLPILDLEFHLQDMDSVIVDAGLLIYSLYDIKGEKEDTVLDDINRALGFDLPRNIEPIKAMVYLVMQQAFHCNLPRIHGLGYVDFLLKNLNDFQGRYSDSLAFLKNQLQVIQMEFESLQPFLKVVAEEPHNKHKTLNEDCATQIIRKAYEVEYVVDACINKEAPHWCLERWLLDIIEEITCIKAKIQEKNTVEDTMKSVSQLARTPRMNEEIVGFEDVIENLRKKLLNGPKGQDVISIHGMPGLGKTTLANRLYSDRSVVSQFDICAQCCVSQVYSYKDLLLALLRDAIGEESERRELPDNELADMLRKTLLPQRYLILVDDVWENSVWDDLRGCFPDANNRSRIILTTRHHEVAKYASVHSDPLHLRMFDEDESWKLLEKKVFGEESCSPLLKKFGLKIAKMCGQLPLSIVLVAGILSEMEKEVECWEQVANNLGTHIHNDSRAIVDQSYHVLPCHLKSCFLYFGAFLEDEVIYSSRLIRLWISEAFIKSCEGRRLEDIAEGYLENLIGRNLVMVTQRADSDGKIKACRLHDVLLDFCKKRAAEENFLLWINRDQISTKAVYSHKQHAHLAFTEMDNLVEWSASCSLVGSVLFKNPDSYSPAFSISPILLNFKFLKVLDLEHRVVIDFIPTELFYLRYLSASIDQNSIPSSISNLWNLETLILKSTPVGRHNTLLLPSTIWDMVKLRHLHIPIFRPENEEALLENSARLYDLETISTPYFSSVEDAELILRKIPNLRKLICEVECLEYPPQYHVLNFPIRLEILKLYRSKAFKTISFCISAPNLKYLELSGFYMDSQYLSETADHLKHLEVLKLYYFAFGDHMEWKVSNGMFPQLKILKLKCVSLKKWIVADDAFPNLEQLVLCGCQDLKEIPSCLMDILSLKYIEVENCNESVVKSAMNIQETQVEDYQNTNFKLVLIKIHLFCLFDMKGIESVSSDEKEKKLTVTGDVDADEGQLVVEKLRKRGMPGFKLLIRIQNIRKVYNF |
Domains
Domain | Start-End | Description | Sequence
|
---|---|---|---|
HMMPfam: PF12061 IPR021929
|
96-496 | DUF3542 Late blight resistance protein R1
|
WKELIWHTKQEFRAQYSFPKSPLAANEVIDDDDNTHSPEFVMEVIDVFVGNINVLVKINDPWSCFFVPGLKEQIERVLKELKLLRFFVCFVSNKCIEPQYRCTTFYTHALIEASYIAMVVWLHLPIYGSRNQDLAPSEVSRLLSDFMEMKIKSIEPGISRNSIYIDVLQALKSTIPQAQKKHVEIPTHSLTVGLSDQMANLQEMLCLLRDNLIHLPILDLEFHLQDMDSVIVDAGLLIYSLYDIKGEKEDTVLDDINRALGFDLPRNIEPIKAMVYLVMQQAFHCNLPRIHGLGYVDFLLKNLNDFQGRYSDSLAFLKNQLQVIQMEFESLQPFLKVVAEEPHNKHKTLNEDCATQIIRKAYEVEYVVDACINKEAPHWCLERWLLDIIEEITCIKAKIQE |
HMMPanther: PTHR11017 | 369-862 | PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN | MVYLVMQQAFHCNLPRIHGLGYVDFLLKNLNDFQGRYSDSLAFLKNQLQVIQMEFESLQPFLKVVAEEPHNKHKTLNEDCATQIIRKAYEVEYVVDACINKEAPHWCLERWLLDIIEEITCIKAKIQEKNTVEDTMKSVSQLARTPRMNEEIVGFEDVIENLRKKLLNGPKGQDVISIHGMPGLGKTTLANRLYSDRSVVSQFDICAQCCVSQVYSYKDLLLALLRDAIGEESERRELPDNELADMLRKTLLPQRYLILVDDVWENSVWDDLRGCFPDANNRSRIILTTRHHEVAKYASVHSDPLHLRMFDEDESWKLLEKKVFGEESCSPLLKKFGLKIAKMCGQLPLSIVLVAGILSEMEKEVECWEQVANNLGTHIHNDSRAIVDQSYHVLPCHLKSCFLYFGAFLEDEVIYSSRLIRLWISEAFIKSCEGRRLEDIAEGYLENLIGRNLVMVTQRADSDGKIKACRLHDVLLDFCKKRAAEENFLLWINR |
HMMPanther: PTHR11017:SF126 | 369-862 | PTHR11017:SF126,OS11G0237600 PROTEIN | MVYLVMQQAFHCNLPRIHGLGYVDFLLKNLNDFQGRYSDSLAFLKNQLQVIQMEFESLQPFLKVVAEEPHNKHKTLNEDCATQIIRKAYEVEYVVDACINKEAPHWCLERWLLDIIEEITCIKAKIQEKNTVEDTMKSVSQLARTPRMNEEIVGFEDVIENLRKKLLNGPKGQDVISIHGMPGLGKTTLANRLYSDRSVVSQFDICAQCCVSQVYSYKDLLLALLRDAIGEESERRELPDNELADMLRKTLLPQRYLILVDDVWENSVWDDLRGCFPDANNRSRIILTTRHHEVAKYASVHSDPLHLRMFDEDESWKLLEKKVFGEESCSPLLKKFGLKIAKMCGQLPLSIVLVAGILSEMEKEVECWEQVANNLGTHIHNDSRAIVDQSYHVLPCHLKSCFLYFGAFLEDEVIYSSRLIRLWISEAFIKSCEGRRLEDIAEGYLENLIGRNLVMVTQRADSDGKIKACRLHDVLLDFCKKRAAEENFLLWINR |
superfamily: SSF52540 | 502-750 | SSF52540 | DTMKSVSQLARTPRMNEEIVGFEDVIENLRKKLLNGPKGQDVISIHGMPGLGKTTLANRLYSDRSVVSQFDICAQCCVSQVYSYKDLLLALLRDAIGEESERRELPDNELADMLRKTLLPQRYLILVDDVWENSVWDDLRGCFPDANNRSRIILTTRHHEVAKYASVHSDPLHLRMFDEDESWKLLEKKVFGEESCSPLLKKFGLKIAKMCGQLPLSIVLVAGILSEMEKEVECWEQVANNLGTHIHND |
Gene3D: G3DSA:3.40.50.300 | 514-662 | G3DSA:3.40.50.300 | PRMNEEIVGFEDVIENLRKKLLNGPKGQDVISIHGMPGLGKTTLANRLYSDRSVVSQFDICAQCCVSQVYSYKDLLLALLRDAIGEESERRELPDNELADMLRKTLLPQRYLILVDDVWENSVWDDLRGCFPDANNRSRIILTTRHHEV |
HMMPfam: PF00931 IPR002182
|
524-799 | NB-ARC,NBS NB-ARC
|
EDVIENLRKKLLNGPKGQDVISIHGMPGLGKTTLANRLYSDRSVVSQFDICAQCCVSQVYSYKDLLLALLRDAIGEESERRELPDNELADMLRKTLLPQRYLILVDDVWENSVWDDLRGCFPDANNRSRIILTTRHHEVAKYASVHSDPLHLRMFDEDESWKLLEKKVFGEESCSPLLKKFGLKIAKMCGQLPLSIVLVAGILSEMEKEVECWEQVANNLGTHIHNDSRAIVDQSYHVLPCHLKSCFLYFGAFLEDEVIYSSRLIRLWISEAFIKS |
FPrintScan: PR00364 IPR000767
|
543-558 | DISEASERSIST Disease resistance protein
|
VISIHGMPGLGKTTLA |
FPrintScan: PR00364 IPR000767
|
618-632 | DISEASERSIST Disease resistance protein
|
TLLPQRYLILVDDVW |
FPrintScan: PR00364 IPR000767
|
712-726 | DISEASERSIST Disease resistance protein
|
CGQLPLSIVLVAGIL |
superfamily: SSF52047 | 913-1200 | SSF52047,LRR | SISPILLNFKFLKVLDLEHRVVIDFIPTELFYLRYLSASIDQNSIPSSISNLWNLETLILKSTPVGRHNTLLLPSTIWDMVKLRHLHIPIFRPENEEALLENSARLYDLETISTPYFSSVEDAELILRKIPNLRKLICEVECLEYPPQYHVLNFPIRLEILKLYRSKAFKTISFCISAPNLKYLELSGFYMDSQYLSETADHLKHLEVLKLYYFAFGDHMEWKVSNGMFPQLKILKLKCVSLKKWIVADDAFPNLEQLVLCGCQDLKEIPSCLMDILSLKYIEVENCN |
Gene3D: G3DSA:3.80.10.10 | 915-1043 | G3DSA:3.80.10.10 | SPILLNFKFLKVLDLEHRVVIDFIPTELFYLRYLSASIDQNSIPSSISNLWNLETLILKSTPVGRHNTLLLPSTIWDMVKLRHLHIPIFRPENEEALLENSARLYDLETISTPYFSSVEDAELILRKIP |
FPrintScan: PR00364 IPR000767
|
919-935 | DISEASERSIST Disease resistance protein
|
LNFKFLKVLDLEHRVVI |
Gene3D: G3DSA:3.80.10.10 | 1044-1200 | G3DSA:3.80.10.10 | NLRKLICEVECLEYPPQYHVLNFPIRLEILKLYRSKAFKTISFCISAPNLKYLELSGFYMDSQYLSETADHLKHLEVLKLYYFAFGDHMEWKVSNGMFPQLKILKLKCVSLKKWIVADDAFPNLEQLVLCGCQDLKEIPSCLMDILSLKYIEVENCN |
List of References
Agim Ballvora, Anika Jöcker, Prisca Viehöver, Hirofumi Ishihara, Jürgen Paal, Khalid Meksem, Rémy Bruggmann, Heiko Schoof, Bernd Weisshaar, Christiane Gebhardt
Comparative sequence analysis of Solanum and Arabidopsis in a hot spot for pathogen resistance on potato chromosome V reveals a patchwork of conserved and rapidly evolving genome segments.
BMC Genomics: 2007, 8();112
PubMed:17474978
WorldCat.org
DOI
(I e)
List of Contributions
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