PRGDB00048344 (Rpp13)

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Rpp13
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 126032751 (EF368155)
Gene Class CNL
Domain Type LRR
Gene Species Arabidopsis thaliana

Comment?

Arabidopsis thaliana ecotype Tamm_21 disease resistance protein Rpp13 variant (Rpp13) gene, partial cds.

DNA Sequence

GAGACGTGGCTATCAAGAAATCTAAAGAGCTCAACTTTGTAAACGTGTATAACGATCATCTGGCCCAACATTCTTCTACTACTTGCAGAAGGGAAGTAGTTCACCATCTGATCAGGAGATACTCATCTGAGAAATACAAGAACAAACGGACGCGATCCTTCTTATACTTTGGAAAATCAGGGTTTTTGGTAGGGCGTGATTCTGAAACAATGAAGATAGGGCGTGATTCTGAAACAATGAAGCTACTTCGAGTGCTTCATCTTGGAGGGCTTCGGTTTCATTTTGCAAGTAATGGGAATCTGATACACTTGAGGTACCTTGGAATTCATGGTTATTATTTCAGCTATTACCTAGCTTTTATATCCAAATTACGGTTTCTACAAACACTAGATGCATCTTCAGATGCATCTGGCCATATCATCAGTGAAACAGTCGATCTACGTAAGCTCACATCCTTAAGACATGTCATAGGAAAATTCTTTGGAGAATTGCTTATAGGCGACGCAGCGAACCTTCAGACCTTGAGGTCTATCTCCTCTGACAGCTGGAACAAACTAAAACATGAGTTGCTCATAAATCTTCGAGATTTGGAGATCTATGAATATTCTACGTCAGAGGAGAGAAGAGTTCCTGTGAGCTGGGCTTCCTTGACTAAACTGAGAAATCTTCGTGTTCTAAAGCTGAGGGCGAAGTGTGGCGTCTATTTATGGTTGGAATCGGAAGAAGCAGTTAGGTCCATGGATGTGATATCACCCAGTCTTGAATCCGTGACACTGGTTGGAATAACTTTCGAGGAAGACCCAATGCCTTTTTTCCAGAAAATGCCGAGACTGGAAGGTCTGATCTTGGAAAATTGTCATTACTCGGGAGGGAAGATGAGCGTCAGCGAACAAGGTTTTGGTAGGCTGAGGAAGCTTTGTTTCTTCATGAAAAGTTTAGATGAGTTGCAGATAGAAGAAGAGGCCATGCC


Protein sequences

Name Description Sequence
disease resistance protein Rpp13 variant disease resistance protein Rpp13 variant [Arabidopsis thaliana].

DVAIKKSKELNFVNVYNDHLAQHSSTTCRREVVHHLIRRYSSEKYKNKRTRSFLYFGKSGFLVGRDSETMKIGRDSETMKLLRVLHLGGLRFHFASNGNLIHLRYLGIHGYYFSYYLAFISKLRFLQTLDASSDASGHIISETVDLRKLTSLRHVIGKFFGELLIGDAANLQTLRSISSDSWNKLKHELLINLRDLEIYEYSTSEERRVPVSWASLTKLRNLRVLKLRAKCGVYLWLESEEAVRSMDVISPSLESVTLVGITFEEDPMPFFQKMPRLEGLILENCHYSGGKMSVSEQGFGRLRKLCFFMKSLDELQIEEEAMP

Domains

Domain Start-End Description Sequence

HMMPanther: PTHR11017
1-323 PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

DVAIKKSKELNFVNVYNDHLAQHSSTTCRREVVHHLIRRYSSEKYKNKRTRSFLYFGKSGFLVGRDSETMKIGRDSETMKLLRVLHLGGLRFHFASNGNLIHLRYLGIHGYYFSYYLAFISKLRFLQTLDASSDASGHIISETVDLRKLTSLRHVIGKFFGELLIGDAANLQTLRSISSDSWNKLKHELLINLRDLEIYEYSTSEERRVPVSWASLTKLRNLRVLKLRAKCGVYLWLESEEAVRSMDVISPSLESVTLVGITFEEDPMPFFQKMPRLEGLILENCHYSGGKMSVSEQGFGRLRKLCFFMKSLDELQIEEEAMP

HMMPanther: PTHR11017:SF14
1-323 PTHR11017:SF14

DVAIKKSKELNFVNVYNDHLAQHSSTTCRREVVHHLIRRYSSEKYKNKRTRSFLYFGKSGFLVGRDSETMKIGRDSETMKLLRVLHLGGLRFHFASNGNLIHLRYLGIHGYYFSYYLAFISKLRFLQTLDASSDASGHIISETVDLRKLTSLRHVIGKFFGELLIGDAANLQTLRSISSDSWNKLKHELLINLRDLEIYEYSTSEERRVPVSWASLTKLRNLRVLKLRAKCGVYLWLESEEAVRSMDVISPSLESVTLVGITFEEDPMPFFQKMPRLEGLILENCHYSGGKMSVSEQGFGRLRKLCFFMKSLDELQIEEEAMP

superfamily: SSF52058
24-308 SSF52058,LRR

SSTTCRREVVHHLIRRYSSEKYKNKRTRSFLYFGKSGFLVGRDSETMKIGRDSETMKLLRVLHLGGLRFHFASNGNLIHLRYLGIHGYYFSYYLAFISKLRFLQTLDASSDASGHIISETVDLRKLTSLRHVIGKFFGELLIGDAANLQTLRSISSDSWNKLKHELLINLRDLEIYEYSTSEERRVPVSWASLTKLRNLRVLKLRAKCGVYLWLESEEAVRSMDVISPSLESVTLVGITFEEDPMPFFQKMPRLEGLILENCHYSGGKMSVSEQGFGRLRKLCFF

Gene3D: G3DSA:3.80.10.10
78-308 G3DSA:3.80.10.10

TMKLLRVLHLGGLRFHFASNGNLIHLRYLGIHGYYFSYYLAFISKLRFLQTLDASSDASGHIISETVDLRKLTSLRHVIGKFFGELLIGDAANLQTLRSISSDSWNKLKHELLINLRDLEIYEYSTSEERRVPVSWASLTKLRNLRVLKLRAKCGVYLWLESEEAVRSMDVISPSLESVTLVGITFEEDPMPFFQKMPRLEGLILENCHYSGGKMSVSEQGFGRLRKLCFF


List of References

Jing Ding, Weili Zhang, Zhiqiang Jing, Jian-Qun Chen, Dacheng Tian
Unique pattern of R-gene variation within populations in Arabidopsis.
Mol. Genet. Genomics: 2007, 277(6);619-29
PubMed:17277944 WorldCat.org DOI (P p)





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