PRGDB00048350 (Rpp13)

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Rpp13
Gene Type Putative_R-Genes,_collected_from_NCBI_Protein
GenBank 126032739 (EF368149)
Gene Class CNL
Domain Type LRR
Gene Species Arabidopsis thaliana

Comment?

Arabidopsis thaliana ecotype Pu2_16 disease resistance protein Rpp13 variant (Rpp13) gene, partial cds.

DNA Sequence

GAGACGTGGCTATCAAGAAATCTAAAGAGCTCAACTTTGTAAATGTGTATAACGATCATGTGGCCCAACATTCTTCTACTACTTGCAGAAGGGAAGTGGTTCACCATCAGGTCAAGAGATACTCATCTGAGAAACGCAAGAACAAACGGATGCGATCCTTCTTAAACTTTGGATTATACAATTTGGTAGGGCCTGATTTTGAAACAACGAAGCTACTTCGAGTGCTTGATGTCAGAAGGCTTGAGGTTCCTTCGAAAATTATTGGGGATCAGATCCACTTGAGGTACCTTGGAATTGGTAGTTATTCTCTCCGCGGTATAGCAGCTATTATATCTAAGTTACGGTTTCTACAAACACTAGAGGCAGCTTACAAATATTTCATCGAGGAAACAATCGATCTCCGTAAGCTCACATCATTAAGACATGTCATAGGAAAATTCGTTGGAGAGTTGCTTATAGGCGACGCAGCGAACCTTCAGACCTTGAGGTCTATCTGCTCTGACAGCTGGAACAAACTAAAACCTGAGTTGCTCATAAATCTTCGAGATTTGGAGATCTATGACAACTATAAGTCAAAGGAGGGAAGAGTTTCTGTGAGCTGGGCTTCCTTGACTAAACTGAGAAATCTTCGTGTTCTGAGGCTGATGGCGAATAATGGCATCTATTTATCGTTGAAATCGGAAGAAGCAGTTAGGTCCATGGATGTGATATCATCCAGTCTTGTATCCGTGACACTGGATGCAATAACTTTCCAGGAAGACCCAATGCCTTTTTTGCAGAAAATGCCGAGACTGGAAGATCTAATCTTCAAAAATTGTGACTACTGGGGAGGGAAGATGAACGTCAGCGAACAAGGTTTTGGTAGGCTGAGGAAGCTTCAATTGGTCATGAAAAGTTTAGATGAGTTGCAGATAGAAGAAGAGGCCATGCC


Protein sequences

Name Description Sequence
disease resistance protein Rpp13 variant disease resistance protein Rpp13 variant [Arabidopsis thaliana].

DVAIKKSKELNFVNVYNDHVAQHSSTTCRREVVHHQVKRYSSEKRKNKRMRSFLNFGLYNLVGPDFETTKLLRVLDVRRLEVPSKIIGDQIHLRYLGIGSYSLRGIAAIISKLRFLQTLEAAYKYFIEETIDLRKLTSLRHVIGKFVGELLIGDAANLQTLRSICSDSWNKLKPELLINLRDLEIYDNYKSKEGRVSVSWASLTKLRNLRVLRLMANNGIYLSLKSEEAVRSMDVISSSLVSVTLDAITFQEDPMPFLQKMPRLEDLIFKNCDYWGGKMNVSEQGFGRLRKLQLVMKSLDELQIEEEAMP

Domains

Domain Start-End Description Sequence

HMMPanther: PTHR11017
1-310 PTHR11017,LEUCINE-RICH REPEAT-CONTAINING PROTEIN

DVAIKKSKELNFVNVYNDHVAQHSSTTCRREVVHHQVKRYSSEKRKNKRMRSFLNFGLYNLVGPDFETTKLLRVLDVRRLEVPSKIIGDQIHLRYLGIGSYSLRGIAAIISKLRFLQTLEAAYKYFIEETIDLRKLTSLRHVIGKFVGELLIGDAANLQTLRSICSDSWNKLKPELLINLRDLEIYDNYKSKEGRVSVSWASLTKLRNLRVLRLMANNGIYLSLKSEEAVRSMDVISSSLVSVTLDAITFQEDPMPFLQKMPRLEDLIFKNCDYWGGKMNVSEQGFGRLRKLQLVMKSLDELQIEEEAMP

HMMPanther: PTHR11017:SF14
1-310 PTHR11017:SF14

DVAIKKSKELNFVNVYNDHVAQHSSTTCRREVVHHQVKRYSSEKRKNKRMRSFLNFGLYNLVGPDFETTKLLRVLDVRRLEVPSKIIGDQIHLRYLGIGSYSLRGIAAIISKLRFLQTLEAAYKYFIEETIDLRKLTSLRHVIGKFVGELLIGDAANLQTLRSICSDSWNKLKPELLINLRDLEIYDNYKSKEGRVSVSWASLTKLRNLRVLRLMANNGIYLSLKSEEAVRSMDVISSSLVSVTLDAITFQEDPMPFLQKMPRLEDLIFKNCDYWGGKMNVSEQGFGRLRKLQLVMKSLDELQIEEEAMP

superfamily: SSF52047
54-306 SSF52047,LRR

LNFGLYNLVGPDFETTKLLRVLDVRRLEVPSKIIGDQIHLRYLGIGSYSLRGIAAIISKLRFLQTLEAAYKYFIEETIDLRKLTSLRHVIGKFVGELLIGDAANLQTLRSICSDSWNKLKPELLINLRDLEIYDNYKSKEGRVSVSWASLTKLRNLRVLRLMANNGIYLSLKSEEAVRSMDVISSSLVSVTLDAITFQEDPMPFLQKMPRLEDLIFKNCDYWGGKMNVSEQGFGRLRKLQLVMKSLDELQIEE

Gene3D: G3DSA:3.80.10.10
65-293 G3DSA:3.80.10.10

DFETTKLLRVLDVRRLEVPSKIIGDQIHLRYLGIGSYSLRGIAAIISKLRFLQTLEAAYKYFIEETIDLRKLTSLRHVIGKFVGELLIGDAANLQTLRSICSDSWNKLKPELLINLRDLEIYDNYKSKEGRVSVSWASLTKLRNLRVLRLMANNGIYLSLKSEEAVRSMDVISSSLVSVTLDAITFQEDPMPFLQKMPRLEDLIFKNCDYWGGKMNVSEQGFGRLRKLQ


List of References

Jing Ding, Weili Zhang, Zhiqiang Jing, Jian-Qun Chen, Dacheng Tian
Unique pattern of R-gene variation within populations in Arabidopsis.
Mol. Genet. Genomics: 2007, 277(6);619-29
PubMed:17277944 WorldCat.org DOI (P p)





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Analyses

Blast

Blast matches against Reference R-Genes. Show


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