PRGDB00048572 (RPS4)
| RPS4 | |
|---|---|
| Gene Type | Putative_R-Genes,_collected_from_NCBI_Protein |
| GenBank | 5459304 (AJ243468) |
| Gene Class | TNL |
| Domain Type | LRR, LRR, NBS, LRR, LRR, TIR, Others |
| Gene Species | Arabidopsis thaliana |
DNA Sequence
ATGGAGACATCATCTATTTCCACTGTGGAAGACAAGCCACCGCAGCATCAGGTGTTCATCAATTTCCGTGGGGCAGATTTGCGCCGGAGATTCGTCAGCCATCTCGTAACGGCCTTGAAATTGAACAACATCAACGTCTTTATCGACGACTATGAAGACAGAGGTCAACCTCTAGATGTACTGCTGAAGAGGATAGAGGAGTCCAAAATCGTTTTGGCTATCTTCTCCGGCAACTACACCGAGTCAGTCTGGTGCGTGAGAGAGCTGGAGAAGATCAAAGATTGTACGGATGAAGGAACACTCGTTGCGATTCCAATCTTCTACAAGCTGGAGCCATCCACCGTTAGAGATTTGAAAGGAAAGTTCGGTGATAGATTTAGGAGTATGGCTAAGGGTGATGAGAGGAAAAAGAAATGGAAGGAAGCTTTTAACTTGATTCCTAACATTATGGGCATCATCATTGACAAGAAAAGTGTGGAGAGTGAGAAAGTCAATGAAATTGTGAAGGCGGTGAAGACAGCGTTGACCGGAATACCACCGGAGGGAAGTCACAACGCCGTCGTGGGTGCTTTAGGTAATAGCAACGCTGGAACTTCCTCAGGAGACAAAAAGCATGAGACTTTTGGAAACGAACAACGGTTAAAAGATTTGGAAGAGAAGTTGGATCGTGATAAATACAAGGGAACTCGTATCATTGGAGTTGTTGGGATGCCCGGAATTGGTAAAACCACACTCCTGAAAGAGCTATATAAGACGTGGCAGGGCAAGTTTTCGAGGCATGCGCTAATCGATCAAATCCGTGTAAAGTCCAAGCACTTGGAGTTGGATCGCTTGCCTCAAATGCTCTTAGGCGAGTTGTCCAAGTTAAACCATCCTCACGTAGACAATCTCAAAGATCCATACAGTCAACTGCATGAACGCAAAGTGCTTGTTGTACTTGATGATGTTAGTAAAAGGGAACAAATAGATGCTCTTCGTGAGATACTAGACTGGATTAAGGAGGGTAAGGAGGGAAGCAGGGTTGTCATTGCAACAAGCGACATGTCCTTAACAAATGGTTTGGTTGATGATACTTACATGGTTCAAAATTTGAACCACAGAGATAGCTTACAACTATTTCACTATCATGCCTTTATTGATGATCAAGCCAATCCTCAAAAGAAAGATTTCATGAAGCTGTCAGAAGGGTTTGTACATTACGCCAGAGGCCATCCACTAGCCCTCAAAGTATTGGGTGGAGAGCTTAATAAGAAAAGTATGGATCATTGGAATTCGAAAATGAAGAAACTTGCACAGAGCCCCAGCCCTAATATTGTCAGTGTCTTCCAAGTGAGTTATGATGAATTGACTACAGCGCAGAAAGATGCATTTCTCGACATAGCCTGTTTCAGATCACAGGACAAGGATTATGTAGAAAGTCTACTGGCTTCATCTGACCTTGGTTCGGCTGAAGCAATGAGTGCAGTCAAATCTCTCACGGATAAGTTCCTGATTAATACTTGTGATGGCCGAGTGGAGATGCATGATCTATTATATAAATTTTCAAGGGAAGTTGATCTGAAGGCATCTAATCAGGATGGTAGCAGACAACGGAGGCTGTGGCTCCATCAACACATAATCAAGGGAGGCATAATCAATGTATTGCAAAATAAAATGAAAGCTGCCAATGTTAGAGGTATTTTCCTAGACTTGTCTGAAGTGGAAGACGAAACGAGCTTAGACCGCGACCACTTCATAAATATGGGAAATCTCCGGTATCTCAAGTTCTACAATTCCCATTGTCCACAGGAATGTAAAACCAACAATAAAATCAACATCCCTGATAAACTTAAGCTACCATTGAAAGAAGTTCGATGCCTCCACTGGCTGAAATTCCCATTGGAGACACTTCCAAACGATTTCAACCCAATTAATCTTGTCGACCTTAAGCTGCCCTACAGTGAAATGGAACAACTTTGGGAGGGTGACAAGGACACACCATGCTTAAGGTGGGTCGATCTCAATCACTCAAGTAAGTTGTGCAGCTTGTCAGGGTTATCAAAAGCTGAAAAGCTTCAAAGGTTGAACCTTGAAGGTTGCACAACACTGAAAGCGTTTCCACATGATATGAAAAAAATGAAAATGCTTGCTTTCTTGAATCTGAAGGGGTGTACAAGTCTCGAATCTCTTCCAGAGATGAATTTGATTTCTCTGAAAACACTTACTCTCAGCGGCTGCTCAACTTTTAAGGAATTTCCGTTGATTTCAGATAATATAGAAACTCTATACTTAGATGGCACAGCAATAAGTCAGCTTCCTATGAACATGGAGAAGCTTCAGAGACTTGTTGTATTGAATATGAAAGACTGCAAAATGCTAGAGGAAATTCCAGGCCGTGTTGGTGAGCTGAAAGCTCTTCAAGAACTGATACTCTCTGATTGTTTAAATCTCAAGATTTTCCCAGAAATCGACATTAGCTTTTTAAACATTTTACTTTTGGATGGGACAGCCATTGAAGTGATGCCACAATTACCCTCAGTGCAGTATTTGTGCTTAAGCAGAAATGCTAAGATCAGCTGCCTTCCTGTTGGAATCAGTCAGCTTTCTCAACTTAAATGGCTGGACCTGAAGTATTGTACGAGTCTTACATCAGTTCCAGAGTTTCCACCAAATCTTCAGTGCTTAGATGCACACGGCTGTAGTTCGCTGAAGACAGTTTCAAAGCCTTTGGCCCGTATCATGCCAACTGAACAGAATCATTCCACATTCATTTTCACCAACTGTGAGAACCTGGAACAAGCTGCAAAGGAGGAAATCACATCGTATGCTCAAAGGAAATGCCAGCTGTTATCATATGCTCGGAAACGCTACAATGGGGGTCTTGTTTCAGAATCTTTGTTCAGCACTTGCTTTCCTGGATGTGAAGTGCCTTCTTGGTTTTGTCATGAAACAGTTGGATCTGAGTTAGAAGTAAAACTCCTCCCACATTGGCATGACAAGAAGCTTGCCGGGATTGCTCTATGTGCTGTAGTCTCATGTCTTGACCCCCAAGATCAAGTCAGCCGCTTGTCAGTGACCTGCACCTTTAAAGTAAAAGATGAAGACAAGTCTTGGGTCGCATATACTTGTCCAGTAGGAAGTTGGACCAGACATGGAGGCGGGAAAGATAAGATTGAGCTAGACCATGTCTTCATTGGATACACCAGTTGCCCACATACTATAAAATGTCATGAAGAAGGTAACTCAGATGAATGCAATCCTACCGAAGCCTCTCTTAAATTTACTGTGACAGGAGGTACAAGTGAGAATGGAAAATACAAGGTGTTGAAGTGTGGTTTAAGTTTGGTGTATGCTAAGGATAAAGACAAAAATAGTGCTCTTGAAACAAAGTACGATATGCTTATTGGAAAGAGCTTTCAAGAAACTTCAGAAGGGGTTGATGGAAGGGTAAAGAAAACGAAAGGAAAGTACGTTATGCCTGTTGAAAAGAACTTTCAAGAAACTACAGAAGGGGTTGATGGAAGAGTAAATAAAAAGAAAAAAACAAGAATGGATAATGGACGGCCAAAGAAGAAGCAGAGATCAGGAAGAGATGATAATCAAACTAGGATGCAAGTGGAACTCCAAGAAGGAAATATAAATTCAGTGATCATGCACACGGTTAAGAATTTCTGA
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| disease resistance protein RPS4 | disease resistance protein RPS4 [Arabidopsis thaliana]. | METSSISTVEDKPPQHQVFINFRGADLRRRFVSHLVTALKLNNINVFIDDYEDRGQPLDVLLKRIEESKIVLAIFSGNYTESVWCVRELEKIKDCTDEGTLVAIPIFYKLEPSTVRDLKGKFGDRFRSMAKGDERKKKWKEAFNLIPNIMGIIIDKKSVESEKVNEIVKAVKTALTGIPPEGSHNAVVGALGNSNAGTSSGDKKHETFGNEQRLKDLEEKLDRDKYKGTRIIGVVGMPGIGKTTLLKELYKTWQGKFSRHALIDQIRVKSKHLELDRLPQMLLGELSKLNHPHVDNLKDPYSQLHERKVLVVLDDVSKREQIDALREILDWIKEGKEGSRVVIATSDMSLTNGLVDDTYMVQNLNHRDSLQLFHYHAFIDDQANPQKKDFMKLSEGFVHYARGHPLALKVLGGELNKKSMDHWNSKMKKLAQSPSPNIVSVFQVSYDELTTAQKDAFLDIACFRSQDKDYVESLLASSDLGSAEAMSAVKSLTDKFLINTCDGRVEMHDLLYKFSREVDLKASNQDGSRQRRLWLHQHIIKGGIINVLQNKMKAANVRGIFLDLSEVEDETSLDRDHFINMGNLRYLKFYNSHCPQECKTNNKINIPDKLKLPLKEVRCLHWLKFPLETLPNDFNPINLVDLKLPYSEMEQLWEGDKDTPCLRWVDLNHSSKLCSLSGLSKAEKLQRLNLEGCTTLKAFPHDMKKMKMLAFLNLKGCTSLESLPEMNLISLKTLTLSGCSTFKEFPLISDNIETLYLDGTAISQLPMNMEKLQRLVVLNMKDCKMLEEIPGRVGELKALQELILSDCLNLKIFPEIDISFLNILLLDGTAIEVMPQLPSVQYLCLSRNAKISCLPVGISQLSQLKWLDLKYCTSLTSVPEFPPNLQCLDAHGCSSLKTVSKPLARIMPTEQNHSTFIFTNCENLEQAAKEEITSYAQRKCQLLSYARKRYNGGLVSESLFSTCFPGCEVPSWFCHETVGSELEVKLLPHWHDKKLAGIALCAVVSCLDPQDQVSRLSVTCTFKVKDEDKSWVAYTCPVGSWTRHGGGKDKIELDHVFIGYTSCPHTIKCHEEGNSDECNPTEASLKFTVTGGTSENGKYKVLKCGLSLVYAKDKDKNSALETKYDMLIGKSFQETSEGVDGRVKKTKGKYVMPVEKNFQETTEGVDGRVNKKKKTRMDNGRPKKKQRSGRDDNQTRMQVELQEGNINSVIMHTVKNF |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| superfamily: SSF52200 IPR000157
|
4-152 | TIR Toll/interleukin-1 receptor homology (TIR) domain
|
SSISTVEDKPPQHQVFINFRGADLRRRFVSHLVTALKLNNINVFIDDYEDRGQPLDVLLKRIEESKIVLAIFSGNYTESVWCVRELEKIKDCTDEGTLVAIPIFYKLEPSTVRDLKGKFGDRFRSMAKGDERKKKWKEAFNLIPNIMGI |
| ProfileScan: PS50104 IPR000157
|
14-149 | TIR Toll/interleukin-1 receptor homology (TIR) domain
|
PQHQVFINFRGADLRRRFVSHLVTALKLNNINVFIDDYEDRGQPLDVLLKRIEESKIVLAIFSGNYTESVWCVRELEKIKDCTDEGTLVAIPIFYKLEPSTVRDLKGKFGDRFRSMAKGDERKKKWKEAFNLIPNI |
| Gene3D: G3DSA:3.40.50.10140 | 14-141 | G3DSA:3.40.50.10140 | PQHQVFINFRGADLRRRFVSHLVTALKLNNINVFIDDYEDRGQPLDVLLKRIEESKIVLAIFSGNYTESVWCVRELEKIKDCTDEGTLVAIPIFYKLEPSTVRDLKGKFGDRFRSMAKGDERKKKWKE |
| HMMSmart: SM00255 IPR000157
|
15-149 | TIR Toll/interleukin-1 receptor homology (TIR) domain
|
QHQVFINFRGADLRRRFVSHLVTALKLNNINVFIDDYEDRGQPLDVLLKRIEESKIVLAIFSGNYTESVWCVRELEKIKDCTDEGTLVAIPIFYKLEPSTVRDLKGKFGDRFRSMAKGDERKKKWKEAFNLIPNI |
| HMMPfam: PF01582 IPR000157
|
18-142 | TIR Toll/interleukin-1 receptor homology (TIR) domain
|
VFINFRGADLRRRFVSHLVTALKLNNINVFIDDYEDRGQPLDVLLKRIEESKIVLAIFSGNYTESVWCVRELEKIKDCTDEGTLVAIPIFYKLEPSTVRDLKGKFGDRFRSMAKGDERKKKWKEA |
| HMMPanther: PTHR23155 | 25-939 | PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN | ADLRRRFVSHLVTALKLNNINVFIDDYEDRGQPLDVLLKRIEESKIVLAIFSGNYTESVWCVRELEKIKDCTDEGTLVAIPIFYKLEPSTVRDLKGKFGDRFRSMAKGDERKKKWKEAFNLIPNIMGIIIDKKSVESEKVNEIVKAVKTALTGIPPEGSHNAVVGALGNSNAGTSSGDKKHETFGNEQRLKDLEEKLDRDKYKGTRIIGVVGMPGIGKTTLLKELYKTWQGKFSRHALIDQIRVKSKHLELDRLPQMLLGELSKLNHPHVDNLKDPYSQLHERKVLVVLDDVSKREQIDALREILDWIKEGKEGSRVVIATSDMSLTNGLVDDTYMVQNLNHRDSLQLFHYHAFIDDQANPQKKDFMKLSEGFVHYARGHPLALKVLGGELNKKSMDHWNSKMKKLAQSPSPNIVSVFQVSYDELTTAQKDAFLDIACFRSQDKDYVESLLASSDLGSAEAMSAVKSLTDKFLINTCDGRVEMHDLLYKFSREVDLKASNQDGSRQRRLWLHQHIIKGGIINVLQNKMKAANVRGIFLDLSEVEDETSLDRDHFINMGNLRYLKFYNSHCPQECKTNNKINIPDKLKLPLKEVRCLHWLKFPLETLPNDFNPINLVDLKLPYSEMEQLWEGDKDTPCLRWVDLNHSSKLCSLSGLSKAEKLQRLNLEGCTTLKAFPHDMKKMKMLAFLNLKGCTSLESLPEMNLISLKTLTLSGCSTFKEFPLISDNIETLYLDGTAISQLPMNMEKLQRLVVLNMKDCKMLEEIPGRVGELKALQELILSDCLNLKIFPEIDISFLNILLLDGTAIEVMPQLPSVQYLCLSRNAKISCLPVGISQLSQLKWLDLKYCTSLTSVPEFPPNLQCLDAHGCSSLKTVSKPLARIMPTEQNHSTFIFTNCENLEQAAKEEITSYAQRK |
| HMMPanther: PTHR23155:SF48 | 25-939 | PTHR23155:SF48,SUBFAMILY NOT NAMED | ADLRRRFVSHLVTALKLNNINVFIDDYEDRGQPLDVLLKRIEESKIVLAIFSGNYTESVWCVRELEKIKDCTDEGTLVAIPIFYKLEPSTVRDLKGKFGDRFRSMAKGDERKKKWKEAFNLIPNIMGIIIDKKSVESEKVNEIVKAVKTALTGIPPEGSHNAVVGALGNSNAGTSSGDKKHETFGNEQRLKDLEEKLDRDKYKGTRIIGVVGMPGIGKTTLLKELYKTWQGKFSRHALIDQIRVKSKHLELDRLPQMLLGELSKLNHPHVDNLKDPYSQLHERKVLVVLDDVSKREQIDALREILDWIKEGKEGSRVVIATSDMSLTNGLVDDTYMVQNLNHRDSLQLFHYHAFIDDQANPQKKDFMKLSEGFVHYARGHPLALKVLGGELNKKSMDHWNSKMKKLAQSPSPNIVSVFQVSYDELTTAQKDAFLDIACFRSQDKDYVESLLASSDLGSAEAMSAVKSLTDKFLINTCDGRVEMHDLLYKFSREVDLKASNQDGSRQRRLWLHQHIIKGGIINVLQNKMKAANVRGIFLDLSEVEDETSLDRDHFINMGNLRYLKFYNSHCPQECKTNNKINIPDKLKLPLKEVRCLHWLKFPLETLPNDFNPINLVDLKLPYSEMEQLWEGDKDTPCLRWVDLNHSSKLCSLSGLSKAEKLQRLNLEGCTTLKAFPHDMKKMKMLAFLNLKGCTSLESLPEMNLISLKTLTLSGCSTFKEFPLISDNIETLYLDGTAISQLPMNMEKLQRLVVLNMKDCKMLEEIPGRVGELKALQELILSDCLNLKIFPEIDISFLNILLLDGTAIEVMPQLPSVQYLCLSRNAKISCLPVGISQLSQLKWLDLKYCTSLTSVPEFPPNLQCLDAHGCSSLKTVSKPLARIMPTEQNHSTFIFTNCENLEQAAKEEITSYAQRK |
| superfamily: SSF52540 | 205-438 | SSF52540 | HETFGNEQRLKDLEEKLDRDKYKGTRIIGVVGMPGIGKTTLLKELYKTWQGKFSRHALIDQIRVKSKHLELDRLPQMLLGELSKLNHPHVDNLKDPYSQLHERKVLVVLDDVSKREQIDALREILDWIKEGKEGSRVVIATSDMSLTNGLVDDTYMVQNLNHRDSLQLFHYHAFIDDQANPQKKDFMKLSEGFVHYARGHPLALKVLGGELNKKSMDHWNSKMKKLAQSPSPNI |
| Gene3D: G3DSA:3.40.50.300 | 205-356 | G3DSA:3.40.50.300 | HETFGNEQRLKDLEEKLDRDKYKGTRIIGVVGMPGIGKTTLLKELYKTWQGKFSRHALIDQIRVKSKHLELDRLPQMLLGELSKLNHPHVDNLKDPYSQLHERKVLVVLDDVSKREQIDALREILDWIKEGKEGSRVVIATSDMSLTNGLVD |
| HMMPfam: PF00931 IPR002182
|
211-472 | NB-ARC,NBS NB-ARC
|
EQRLKDLEEKLDRDKYKGTRIIGVVGMPGIGKTTLLKELYKTWQGKFSRHALIDQIRVKSKHLELDRLPQMLLGELSKLNHPHVDNLKDPYSQLHERKVLVVLDDVSKREQIDALREILDWIKEGKEGSRVVIATSDMSLTNGLVDDTYMVQNLNHRDSLQLFHYHAFIDDQANPQKKDFMKLSEGFVHYARGHPLALKVLGGELNKKSMDHWNSKMKKLAQSPSPNIVSVFQVSYDELTTAQKDAFLDIACFRSQDKDYVE |
| FPrintScan: PR00364 IPR000767
|
231-246 | DISEASERSIST Disease resistance protein
|
IIGVVGMPGIGKTTLL |
| FPrintScan: PR00364 IPR000767
|
303-317 | DISEASERSIST Disease resistance protein
|
QLHERKVLVVLDDVS |
| FPrintScan: PR00364 IPR000767
|
401-415 | DISEASERSIST Disease resistance protein
|
ARGHPLALKVLGGEL |
| superfamily: SSF46785 | 436-540 | SSF46785 | PNIVSVFQVSYDELTTAQKDAFLDIACFRSQDKDYVESLLASSDLGSAEAMSAVKSLTDKFLINTCDGRVEMHDLLYKFSREVDLKASNQDGSRQRRLWLHQHII |
| superfamily: SSF52058 | 569-940 | SSF52058,LRR | DETSLDRDHFINMGNLRYLKFYNSHCPQECKTNNKINIPDKLKLPLKEVRCLHWLKFPLETLPNDFNPINLVDLKLPYSEMEQLWEGDKDTPCLRWVDLNHSSKLCSLSGLSKAEKLQRLNLEGCTTLKAFPHDMKKMKMLAFLNLKGCTSLESLPEMNLISLKTLTLSGCSTFKEFPLISDNIETLYLDGTAISQLPMNMEKLQRLVVLNMKDCKMLEEIPGRVGELKALQELILSDCLNLKIFPEIDISFLNILLLDGTAIEVMPQLPSVQYLCLSRNAKISCLPVGISQLSQLKWLDLKYCTSLTSVPEFPPNLQCLDAHGCSSLKTVSKPLARIMPTEQNHSTFIFTNCENLEQAAKEEITSYAQRKC |
| Gene3D: G3DSA:3.80.10.10 | 619-810 | G3DSA:3.80.10.10 | CLHWLKFPLETLPNDFNPINLVDLKLPYSEMEQLWEGDKDTPCLRWVDLNHSSKLCSLSGLSKAEKLQRLNLEGCTTLKAFPHDMKKMKMLAFLNLKGCTSLESLPEMNLISLKTLTLSGCSTFKEFPLISDNIETLYLDGTAISQLPMNMEKLQRLVVLNMKDCKMLEEIPGRVGELKALQELILSDCLNL |
| HMMPfam: PF07725 IPR011713
|
638-657 | LRR_3 Leucine-rich repeat 3
|
NLVDLKLPYSEMEQLWEGDK |
| Gene3D: G3DSA:3.80.10.10 | 827-898 | G3DSA:3.80.10.10 | DGTAIEVMPQLPSVQYLCLSRNAKISCLPVGISQLSQLKWLDLKYCTSLTSVPEFPPNLQCLDAHGCSSLKT |
| FPrintScan: PR00364 IPR000767
|
859-875 | DISEASERSIST Disease resistance protein
|
SQLSQLKWLDLKYCTSL |
List of References
W Gassmann, M E Hinsch, B J Staskawicz
The Arabidopsis RPS4 bacterial-resistance gene is a member of the TIR-NBS-LRR family of disease-resistance genes.
Plant J.: 1999, 20(3);265-77
PubMed:10571887
WorldCat.org
(P p)
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