PRGDB00048585 (Disease resistance protein RGA3, putative)
| Disease resistance protein RGA3, putative | |
|---|---|
| Gene Type | Putative_R-Genes,_collected_from_NCBI_Protein |
| GenBank | 32470628 (AY303170) |
| Gene Class | NL |
| Domain Type | LRR, NBS, LRR, Others |
| Gene Species | Solanum bulbocastanum |
DNA Sequence
GTTTTGTTTTAACTGAGCCAAAAGTTTATGGAAGGGAAAAAGAGGAGGATGAGATAGTGAAAATCTTGATAAACAATGTTAGTTATTCCGAAGAAGTTCCAGTACTCCCAATACTTGGTATGGGGGGACTAGGAAAGACGACTCTAGCCCAAATGGTCTTCAATGATCAAAGAATTACTGAGCATTTCAATCTAAAGATATGGGTTTGTGTCTCAGATGATTTTGATGAGAAGAGGTTGATTAAGGCAATTGTAGAATCTATTGAAGGAAAGTCACTGGGTGACATGGACTTGGCTCCCCTCCAGAAAAAGCTTCAGGAGTTGTTGAATGGAAAAAGATACTTTCTTGTTTTGGATGATGTTTGGAATGAAGATCAAGAAAAGTGGGATAATCTTAGAGCAGTATTGAAGATTGGAGCTAGTGGTGCTTCAATTCTAATTACTACTCGTCTTGAAAAAATTGGATCAATTATGGGAACTTTGCAACTATATCAGTTATCAAATTTGTCTCAAGAAGATTGTTGGTTGTTGTTCAAGCAACGTGCATTTTGCCACCAAACCGAAACAAGTCCTAAACTTATGGAAATCGGAAAGGAGATTGTGAAGAAATGTGGGGGTGTGCCTCTAGCAGCCAAAACTCTTGGAGGCCTTTTACGCTTCAAGAGGGAAGAAAGTGAATGGGAACATGTGAGAGATAGTGAGATTTGGAATTTACCTCAAGATGAAAATTCTGTTTTGCCTGCCCTGAGGCTGAGTTATCATCATCTTCCACTTGATTTGAGACAATGTTTTGCATATTGCGCAGTATTCCCAAAGGACACCAAAATAGAAAAGGAATATCTCATCGCTCTCTGGATGGCACACAGTTTTCTTTTATCAAAAGGAAACATGGAGCTAGAGGATGTGGGCAATGAAGTATGGAATGAATTATACTTGAGGTCTTTTTTCCAAGAGATTGAAGTTAAATCTGGTAAAACTTATTTCAAGATGCATGATCTCATCCATGATTTGGCTACATCTATGTTTTCAGCAAGCGCATCAAGCAGAAGTATACGCCAAATAAATGTAAAAGATGATGAAGATATGATGTTCATTGTAACAAATTATAAAGATATGATGTCCATTGGTTTCTCCGAAGTGGTGTCTTCTTACTCTCCTTCGCTCTTTAAAAGGTTTGTCTCGTTAAGGGTGCTTAATCTAAGTAACTCAGAATTTGAACAGTTACCGTCTTCCGTTGGAGATCTAGTACATTTAAGATACCTTGACCTGTCTGGTAATAAAATTTGTAGTCTTCCAAAGAGGTTGTGCAAGCTTCAAAATCTGCAGACTCTTGATCTATATAATTGCCAGTCACTTTCTTGTTTGCCGAAACAAACAAGTAAGCTTTGTAGTCTCCGGAATCTTGTACTTGATCACTGTCCATTGACTTCTATGCCACCAAGAATAGGATTGTTGACATGCCTTAAGACACTAGGTTACTTTGTTGTAGGCGAGAGGAAAGGTTATCAACTTGGTGAACTACGAAATTTAAACCTCCGTGGTGCAATTTCAATCACACATCTTGAGAGAGTGAAAAATGATATGGAGGCAAAAGAAGCCAATTTATCTGCAAAAGCAAATCTACACTCTTTAAGCATGAGTTGGGATAGACCAAACAGATATGAATCCGAAGAAGTTAAAGTGCTTGAAGCCCTCAAACCACATCCCAATCTGAAATATTTAGAAATCATTGACTTCTGTGGATTCTGTCTCCCTGACTGGATGAATCACTCAGTTTTGAAAAATGTTGTCTCTATTCTAATTAGCGGTTGTGAAAACTGCTCGTGCTTACCACCCTTTGGTGAGCTGCCTTGTCTAGAAAGTCTGGAGTTACAAGACGGGTCTGTGGAGGTGGAGTATGTTGAAGATTCTGGATTCCTGACAAGAAGAAGATTTCCATCCCTGAGAAAACTTCATATAGGTGGCTTTTGTAATCTGAAAGGATTGCAGAGAATGAAAGGAGCAGAGCAATTCCCCGTGCTTGAAGAGATGAAGATTTCGGATTGCCCTATGTTTGTTTTTCCGACCCTTTCTTCTGTCAAGAAATTAGAAATTTGGGGGGAGGCAGATGCAGGAGGTTTGAGCTCCATATCTAATCTCAGCACTCTTACATCCCTCAAGATTTTCAGTAACCACACAGTGACTTCACTACTGGAAGAGATGTTCAAAAACCTTGAAAATCTCATATACTTGAGTGTCTCTTTCTTGGAGAATCTCAAAGAGCTGCCTACCAGCCTGGCTAGTCTCAACAATTTGAAGTGTCTGGATATTCGTTATTGTTACGCACTAGAGAGTCTCCCCGAGGAAGGGCTGGAAGGTTTATCTTCACTCACAGAGTTATTTGTTGAACACTGTAACATGCTAAAATGTTTACCAGAGGGATTGCAGCACCTAACAACCCTCACAAGTTTAAAAATTCGGGGATGTCCACAACTGATCAAGCGGTGTGAGAAGGGAATAGGAGAAGACTGGCACAAAATTTCTCACATTCCTAATGTGAATATATATATTTAAATGGCTGAAGCTTTCCTTCAAGTTCTGCTAGATAATCTCACTTTTTTCATCCAAGGGGAACTTGGATTGGTTTTTGGTTTCGAGAAGGAGTTTAAAAAACTTTCAAGTATGTTTTCAATGATCCAAGCTGTGCTAGAAGATGCTCAAGAGAAGCAACTGAAGTACAAGGCAATAAAGAACTGGTTACAGAAACTCAATGTTGCTGCATATGAAGTTGATGACATCTTGGATGACTGTAAAACTGAGGCAGCAAGATTCAAGCAGGCTGTATTGGGGCGTTATCATCCACGGACCATCACTTTCTGTTACAAGGTGGGAAAAAGAATGAAAGAAATGATGGAAAAACTAGATGCAATTGCAGAGGAACGGAGGAATTTTCATTTAGATGAAAGGATTATAGAGAGACAAGCTGCTAGACGGCAAACAG
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| Disease resistance protein RGA3, putative | Disease resistance protein RGA3, putative [Solanum bulbocastanum]. | MAEAFLQVLLDNLTFFIQGELGLVFGFEKEFKKLSSMFSMIQAVLEDAQEKQLKYKAIKNWLQKLNVAAYEVDDILDDCKTEAARFKQAVLGRYHPRTITFCYKVGKRMKEMMEKLDAIAEERRNFHLDERIIERQAARRQTGFVLTEPKVYGREKEEDEIVKILINNVSYSEEVPVLPILGMGGLGKTTLAQMVFNDQRITEHFNLKIWVCVSDDFDEKRLIKAIVESIEGKSLGDMDLAPLQKKLQELLNGKRYFLVLDDVWNEDQEKWDNLRAVLKIGASGASILITTRLEKIGSIMGTLQLYQLSNLSQEDCWLLFKQRAFCHQTETSPKLMEIGKEIVKKCGGVPLAAKTLGGLLRFKREESEWEHVRDSEIWNLPQDENSVLPALRLSYHHLPLDLRQCFAYCAVFPKDTKIEKEYLIALWMAHSFLLSKGNMELEDVGNEVWNELYLRSFFQEIEVKSGKTYFKMHDLIHDLATSMFSASASSRSIRQINVKDDEDMMFIVTNYKDMMSIGFSEVVSSYSPSLFKRFVSLRVLNLSNSEFEQLPSSVGDLVHLRYLDLSGNKICSLPKRLCKLQNLQTLDLYNCQSLSCLPKQTSKLCSLRNLVLDHCPLTSMPPRIGLLTCLKTLGYFVVGERKGYQLGELRNLNLRGAISITHLERVKNDMEAKEANLSAKANLHSLSMSWDRPNRYESEEVKVLEALKPHPNLKYLEIIDFCGFCLPDWMNHSVLKNVVSILISGCENCSCLPPFGELPCLESLELQDGSVEVEYVEDSGFLTRRRFPSLRKLHIGGFCNLKGLQRMKGAEQFPVLEEMKISDCPMFVFPTLSSVKKLEIWGEADAGGLSSISNLSTLTSLKIFSNHTVTSLLEEMFKNLENLIYLSVSFLENLKELPTSLASLNNLKCLDIRYCYALESLPEEGLEGLSSLTELFVEHCNMLKCLPEGLQHLTTLTSLKIRGCPQLIKRCEKGIGEDWHKISHIPNVNIYI |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| HMMPanther: PTHR23155 | 24-969 | PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN | VFGFEKEFKKLSSMFSMIQAVLEDAQEKQLKYKAIKNWLQKLNVAAYEVDDILDDCKTEAARFKQAVLGRYHPRTITFCYKVGKRMKEMMEKLDAIAEERRNFHLDERIIERQAARRQTGFVLTEPKVYGREKEEDEIVKILINNVSYSEEVPVLPILGMGGLGKTTLAQMVFNDQRITEHFNLKIWVCVSDDFDEKRLIKAIVESIEGKSLGDMDLAPLQKKLQELLNGKRYFLVLDDVWNEDQEKWDNLRAVLKIGASGASILITTRLEKIGSIMGTLQLYQLSNLSQEDCWLLFKQRAFCHQTETSPKLMEIGKEIVKKCGGVPLAAKTLGGLLRFKREESEWEHVRDSEIWNLPQDENSVLPALRLSYHHLPLDLRQCFAYCAVFPKDTKIEKEYLIALWMAHSFLLSKGNMELEDVGNEVWNELYLRSFFQEIEVKSGKTYFKMHDLIHDLATSMFSASASSRSIRQINVKDDEDMMFIVTNYKDMMSIGFSEVVSSYSPSLFKRFVSLRVLNLSNSEFEQLPSSVGDLVHLRYLDLSGNKICSLPKRLCKLQNLQTLDLYNCQSLSCLPKQTSKLCSLRNLVLDHCPLTSMPPRIGLLTCLKTLGYFVVGERKGYQLGELRNLNLRGAISITHLERVKNDMEAKEANLSAKANLHSLSMSWDRPNRYESEEVKVLEALKPHPNLKYLEIIDFCGFCLPDWMNHSVLKNVVSILISGCENCSCLPPFGELPCLESLELQDGSVEVEYVEDSGFLTRRRFPSLRKLHIGGFCNLKGLQRMKGAEQFPVLEEMKISDCPMFVFPTLSSVKKLEIWGEADAGGLSSISNLSTLTSLKIFSNHTVTSLLEEMFKNLENLIYLSVSFLENLKELPTSLASLNNLKCLDIRYCYALESLPEEGLEGLSSLTELFVEHCNMLKCLPEGLQHLTTLTSLKIRGCPQLIK |
| superfamily: SSF52540 | 134-383 | SSF52540 | ERQAARRQTGFVLTEPKVYGREKEEDEIVKILINNVSYSEEVPVLPILGMGGLGKTTLAQMVFNDQRITEHFNLKIWVCVSDDFDEKRLIKAIVESIEGKSLGDMDLAPLQKKLQELLNGKRYFLVLDDVWNEDQEKWDNLRAVLKIGASGASILITTRLEKIGSIMGTLQLYQLSNLSQEDCWLLFKQRAFCHQTETSPKLMEIGKEIVKKCGGVPLAAKTLGGLLRFKREESEWEHVRDSEIWNLPQD |
| Gene3D: G3DSA:3.40.50.300 | 153-292 | G3DSA:3.40.50.300 | GREKEEDEIVKILINNVSYSEEVPVLPILGMGGLGKTTLAQMVFNDQRITEHFNLKIWVCVSDDFDEKRLIKAIVESIEGKSLGDMDLAPLQKKLQELLNGKRYFLVLDDVWNEDQEKWDNLRAVLKIGASGASILITTR |
| HMMPfam: PF00931 IPR002182
|
158-433 | NB-ARC,NBS NB-ARC
|
EDEIVKILINNVSYSEEVPVLPILGMGGLGKTTLAQMVFNDQRITEHFNLKIWVCVSDDFDEKRLIKAIVESIEGKSLGDMDLAPLQKKLQELLNGKRYFLVLDDVWNEDQEKWDNLRAVLKIGASGASILITTRLEKIGSIMGTLQLYQLSNLSQEDCWLLFKQRAFCHQTETSPKLMEIGKEIVKKCGGVPLAAKTLGGLLRFKREESEWEHVRDSEIWNLPQDENSVLPALRLSYHHLPLDLRQCFAYCAVFPKDTKIEKEYLIALWMAHSFL |
| FPrintScan: PR00364 IPR000767
|
177-192 | DISEASERSIST Disease resistance protein
|
VLPILGMGGLGKTTLA |
| FPrintScan: PR00364 IPR000767
|
250-264 | DISEASERSIST Disease resistance protein
|
LLNGKRYFLVLDDVW |
| FPrintScan: PR00364 IPR000767
|
346-360 | DISEASERSIST Disease resistance protein
|
CGGVPLAAKTLGGLL |
| superfamily: SSF52058 | 471-830 | SSF52058,LRR | KMHDLIHDLATSMFSASASSRSIRQINVKDDEDMMFIVTNYKDMMSIGFSEVVSSYSPSLFKRFVSLRVLNLSNSEFEQLPSSVGDLVHLRYLDLSGNKICSLPKRLCKLQNLQTLDLYNCQSLSCLPKQTSKLCSLRNLVLDHCPLTSMPPRIGLLTCLKTLGYFVVGERKGYQLGELRNLNLRGAISITHLERVKNDMEAKEANLSAKANLHSLSMSWDRPNRYESEEVKVLEALKPHPNLKYLEIIDFCGFCLPDWMNHSVLKNVVSILISGCENCSCLPPFGELPCLESLELQDGSVEVEYVEDSGFLTRRRFPSLRKLHIGGFCNLKGLQRMKGAEQFPVLEEMKISDCPMFVFP |
| Gene3D: G3DSA:3.80.10.10 | 513-633 | G3DSA:3.80.10.10 | DMMSIGFSEVVSSYSPSLFKRFVSLRVLNLSNSEFEQLPSSVGDLVHLRYLDLSGNKICSLPKRLCKLQNLQTLDLYNCQSLSCLPKQTSKLCSLRNLVLDHCPLTSMPPRIGLLTCLKTL |
| HMMPfam: PF12799 | 536-574 | LRR_4,Leucine Rich repeats (2 copies) | SLRVLNLSNSEFEQLPSSVGDLVHLRYLDLSGNKICSLP |
| ProfileScan: PS51450 IPR001611
|
536-557 | LRR,Leucine-rich repeat profile. Leucine-rich repeat
|
SLRVLNLSNSEFEQLPSSVGDL |
| HMMSmart: SM00369 IPR003591
|
557-580 | LRR_TYP Leucine-rich repeat, typical subtype
|
LVHLRYLDLSGNKICSLPKRLCKL |
| ProfileScan: PS51450 IPR001611
|
559-581 | LRR,Leucine-rich repeat profile. Leucine-rich repeat
|
HLRYLDLSGNKICSLPKRLCKLQ |
| FPrintScan: PR00364 IPR000767
|
578-594 | DISEASERSIST Disease resistance protein
|
CKLQNLQTLDLYNCQSL |
| ProfileScan: PS51450 IPR001611
|
582-604 | LRR,Leucine-rich repeat profile. Leucine-rich repeat
|
NLQTLDLYNCQSLSCLPKQTSKL |
| HMMPfam: PF00560 IPR001611
|
582-599 | LRR_1 Leucine-rich repeat
|
NLQTLDLYNCQSLSCLPK |
| HMMPfam: PF13504 | 606-621 | LRR_7,Leucine rich repeat | SLRNLVLDHCPLTSMP |
| ProfileScan: PS51450 IPR001611
|
606-627 | LRR,Leucine-rich repeat profile. Leucine-rich repeat
|
SLRNLVLDHCPLTSMPPRIGLL |
| Gene3D: G3DSA:3.80.10.10 | 688-916 | G3DSA:3.80.10.10 | MSWDRPNRYESEEVKVLEALKPHPNLKYLEIIDFCGFCLPDWMNHSVLKNVVSILISGCENCSCLPPFGELPCLESLELQDGSVEVEYVEDSGFLTRRRFPSLRKLHIGGFCNLKGLQRMKGAEQFPVLEEMKISDCPMFVFPTLSSVKKLEIWGEADAGGLSSISNLSTLTSLKIFSNHTVTSLLEEMFKNLENLIYLSVSFLENLKELPTSLASLNNLKCLDIRYCY |
| superfamily: SSF52058 | 832-988 | SSF52058,LRR | LSSVKKLEIWGEADAGGLSSISNLSTLTSLKIFSNHTVTSLLEEMFKNLENLIYLSVSFLENLKELPTSLASLNNLKCLDIRYCYALESLPEEGLEGLSSLTELFVEHCNMLKCLPEGLQHLTTLTSLKIRGCPQLIKRCEKGIGEDWHKISHIPNV |
| HMMPfam: PF13855 | 893-941 | LRR_8,Leucine rich repeat | NLKELPTSLASLNNLKCLDIRYCYALESLPEEGLEGLSSLTELFVEHCN |
| ProfileScan: PS51450 IPR001611
|
931-954 | LRR,Leucine-rich repeat profile. Leucine-rich repeat
|
SLTELFVEHCNMLKCLPEGLQHLT |
List of References
List of Contributions
There has not been any contribution yet.
