PRGDB00048587 (Disease resistance protein RGA1, putative)
| Disease resistance protein RGA1, putative | |
|---|---|
| Gene Type | Putative_R-Genes,_collected_from_NCBI_Protein |
| GenBank | 32470628 (AY303170) |
| Gene Class | NL |
| Domain Type | LRR, NBS, LRR, LRR, Others |
| Gene Species | Solanum bulbocastanum |
DNA Sequence
GTTCTGTGTTAACTGAACCACAAGTTTATGGAAGGGACAAAGAAAAAGATGAGATAGTGAAAATCCTAATAAACACTGCTAGTGATGCCCAAAAACTCTCAGTCCTCCCAATACTTGGTATGGGGGGACTAGGAAAGACGACTCTTTCCCAAATGGTCTTCAATGATCAGAGAGTAACTGAGCGTTTCTATCCCAAAATATGGATTTGCATCTCGGATGATTTTAATGAGAAGAGGTTGATAAAGGCAATAGTAGAATCTATTGAAGGGAAGTCCCTCAGTGACATGGACTTGGCTCCACTTCAAAAGAAGCTTCAAGAGTTGCTGAATGGAAAAAGATACTTCCTTGTCTTAGATGATGTTTGGAATGAAGATCAACATAAGTGGGCTAATTTAAGAGCAGTCTTGAAGGTTGGAGCAAGTGGTGCATTTGTTCTAACTACTACTCGTCTTGAAAAGGTTGGATCAATTATGGGAACATTGCAACCATATGAATTGTCAAATCTGTCTCCAGAGGATTGTTGGTTTTTGTTCATGCAGCGTGCATTTGGACACCAAGAAGAAATAAATCCAAACCTTATGGCAATCGGAAAGGAGATTGTGAAAAAATGTGGTGGTGTGCCTCTAGCAGCCAAGACTCTTGGAGGTATTTTGCGCTTCAAGAGAGAAGAAAGAGAATGGGAACATGTGAGAGACAGTCCGATTTGGAATTTGCCTCAAGATGAAAGTTCTATTCTGCCTGCCCTGAGGCTTAGTTACCATCATCTTCCACTTGATTTGAGACAATGCTTTGTGTATTGTGCGGTATTCCCGAAGGACACCAAAATGGCAAAGGAAAATCTTATCGCTTTCTGGATGGCACACGGTTTTCTTTTATCGAAAGGAAATTTGGAGCTAGAGGATGTAGGTAATGAAGTATGGAATGAATTATACTTGAGGTCTTTCTTCCAAGAGATTGAAGTTGAATCTGGTAAAACTTATTTCAAGATGCATGACCTCATCCATGATTTGGCTACATCTCTGTTTTCAGCAAACACATCAAGCAGCAATATTCGTGAAATAAATGCTAATTATGATGGATATATGATGTCGATTGGTTTTGCTGAAGTGGTATCTTCTTACTCTCCGTCACTCTTGCAAAAGTTTGTCTCATTAAGGGTGCTTAATCTAAGAAACTCGAACCTAAATCAATTACCATCTTCCATTGGAGATCTAGTACATTTAAGATACCTGGACTTGTCTGGCAATTTTAGAATTCGTAATCTTCCAAAGAGATTATGCAAGCTTCAAAATCTGCAGACTCTTGATCTACATTATTGCGACTCTCTTTCTTGTTTGCCAAAACAAACAAGTAAACTTGGTAGTCTCCGAAATCTTTTACTTGATGGCTGTTCATTGACATCAACGCCACCAAGGATAGGATTGTTGACATGCCTTAAGTCTCTAAGTTGCTTTGTTATTGGCAAGAGAAAAGGTCATCAACTTGGTGAACTAAAAAACCTAAATCTCTATGGCTCAATTTCAATCACAAAACTTGACAGAGTGAAGAAAGATACGGATGCAAAAGAAGCTAATTTATCTGCTAAAGCAAATCTGCACTCTTTATGCCTGAGTTGGGATCTTGATGGAAAACATAGATATGATTCAGAAGTTCTTGAAGCCCTCAAACCACACTCCAATCTGAAATATTTAGAAATCAATGGCTTCGGAGGAATCCGTCTCCCAGATTGGATGAATCAATCAGTTTTGAAAAATGTTGTCTCTATTAGAATTAGAGGTTGTGAAAACTGCTCATGCTTACCACCCTTTGGTGAGCTGCCTTGTCTAGAAAGTCTAGAGTTACACACCGGGTCAGCGGATGTGGAGTATGTTGAAGATAATGTTCATCCTGGAAGGTTTCCATCCTTGAGGAAACTTGTTATATGGGACTTTAGTAATCTAAAAGGATTGCTGAAAATGGAAGGAGAAAAGCAATTCCCTGTGCTTGAAGAGATGACATTTTACTGGTGCCCTATGTTTGTTATTCCGACCCTTTCTTCTGTCAAGACATTGAAAGTTATTGTGACAGATGCAACAGTTTTGAGGTCCATATCTAATCTTAGGGCTCTTACTTCTCTCGACATTAGCGATAACGTAGAAGCTACTTCACTCCCAGAAGAGATGTTCAAAAGCCTTGCAAATCTCAAATACTTGAAAATCTCTTTCTTTAGGAATCTCAAAGAGTTGCCTACCAGCTTGGCTAGTCTCAATGCTTTGAAGAGCCTCAAATTTGAATTTTGTGACGCACTAGAGAGTCTCCCAGAGGAAGGGGTGAAAGGTTTAACTTCACTCACCGAGTTGTCTGTCAGTAACTGTATGATGCTAAAATGTTTACCGGAGGGATTGCAGCACCTAACAGCCCTCACAACTTTAACAATTACTCAATGTCCAATAGTATTCAAGCGGTGTGAGAGGGGAATAGGAGAAGACTGGCACAAAATTGCTCACATTCCATATTTGACTCTATATGAGTGAATGGCTGAAGCTTTCATTCAAGTTGTGCTAGACAATCTCACTTCTTTCCTCAAAGGGGAACTTGTATTGCTTTTCGGTTTTCAAGATGAGTTCCAAAGGCTTTCAAGCATGTTTTCTACAATCCAAGCCGTCCTTGAAGATGCTCAAGAGAAGCAACTCAACGACAAGCCTCTAGAAAATTGGTTGCAAAAACTCAATGCTGCTACATATGAAGTCGATGACATCTTGGATGAATATAAAACTAAGGCCACAAGATTCTTGCAGTCTGAATATGGCCGTTATCATCCAAAGGTTATCCCTTTCCGCCACAAGGTTGGGAAAAGGATGGATCAAGTGATGAAAAAACTGAATGCAATTGCTGAGGAACGAAAGAAGTTTCATTTGCAAGAAAAGATTATAGAGAGACAAGCTGCTACACGGGAAACAG
Protein sequences
| Name | Description | Sequence |
|---|---|---|
| Disease resistance protein RGA1, putative | Disease resistance protein RGA1, putative [Solanum bulbocastanum]. | MAEAFIQVVLDNLTSFLKGELVLLFGFQDEFQRLSSMFSTIQAVLEDAQEKQLNDKPLENWLQKLNAATYEVDDILDEYKTKATRFLQSEYGRYHPKVIPFRHKVGKRMDQVMKKLNAIAEERKKFHLQEKIIERQAATRETGSVLTEPQVYGRDKEKDEIVKILINTASDAQKLSVLPILGMGGLGKTTLSQMVFNDQRVTERFYPKIWICISDDFNEKRLIKAIVESIEGKSLSDMDLAPLQKKLQELLNGKRYFLVLDDVWNEDQHKWANLRAVLKVGASGAFVLTTTRLEKVGSIMGTLQPYELSNLSPEDCWFLFMQRAFGHQEEINPNLMAIGKEIVKKCGGVPLAAKTLGGILRFKREEREWEHVRDSPIWNLPQDESSILPALRLSYHHLPLDLRQCFVYCAVFPKDTKMAKENLIAFWMAHGFLLSKGNLELEDVGNEVWNELYLRSFFQEIEVESGKTYFKMHDLIHDLATSLFSANTSSSNIREINANYDGYMMSIGFAEVVSSYSPSLLQKFVSLRVLNLRNSNLNQLPSSIGDLVHLRYLDLSGNFRIRNLPKRLCKLQNLQTLDLHYCDSLSCLPKQTSKLGSLRNLLLDGCSLTSTPPRIGLLTCLKSLSCFVIGKRKGHQLGELKNLNLYGSISITKLDRVKKDTDAKEANLSAKANLHSLCLSWDLDGKHRYDSEVLEALKPHSNLKYLEINGFGGIRLPDWMNQSVLKNVVSIRIRGCENCSCLPPFGELPCLESLELHTGSADVEYVEDNVHPGRFPSLRKLVIWDFSNLKGLLKMEGEKQFPVLEEMTFYWCPMFVIPTLSSVKTLKVIVTDATVLRSISNLRALTSLDISDNVEATSLPEEMFKSLANLKYLKISFFRNLKELPTSLASLNALKSLKFEFCDALESLPEEGVKGLTSLTELSVSNCMMLKCLPEGLQHLTALTTLTITQCPIVFKRCERGIGEDWHKIAHIPYLTLYE |
Domains
| Domain | Start-End | Description | Sequence
|
|---|---|---|---|
| HMMPanther: PTHR23155 | 13-952 | PTHR23155,LRR,LEUCINE-RICH REPEAT-CONTAINING PROTEIN | LTSFLKGELVLLFGFQDEFQRLSSMFSTIQAVLEDAQEKQLNDKPLENWLQKLNAATYEVDDILDEYKTKATRFLQSEYGRYHPKVIPFRHKVGKRMDQVMKKLNAIAEERKKFHLQEKIIERQAATRETGSVLTEPQVYGRDKEKDEIVKILINTASDAQKLSVLPILGMGGLGKTTLSQMVFNDQRVTERFYPKIWICISDDFNEKRLIKAIVESIEGKSLSDMDLAPLQKKLQELLNGKRYFLVLDDVWNEDQHKWANLRAVLKVGASGAFVLTTTRLEKVGSIMGTLQPYELSNLSPEDCWFLFMQRAFGHQEEINPNLMAIGKEIVKKCGGVPLAAKTLGGILRFKREEREWEHVRDSPIWNLPQDESSILPALRLSYHHLPLDLRQCFVYCAVFPKDTKMAKENLIAFWMAHGFLLSKGNLELEDVGNEVWNELYLRSFFQEIEVESGKTYFKMHDLIHDLATSLFSANTSSSNIREINANYDGYMMSIGFAEVVSSYSPSLLQKFVSLRVLNLRNSNLNQLPSSIGDLVHLRYLDLSGNFRIRNLPKRLCKLQNLQTLDLHYCDSLSCLPKQTSKLGSLRNLLLDGCSLTSTPPRIGLLTCLKSLSCFVIGKRKGHQLGELKNLNLYGSISITKLDRVKKDTDAKEANLSAKANLHSLCLSWDLDGKHRYDSEVLEALKPHSNLKYLEINGFGGIRLPDWMNQSVLKNVVSIRIRGCENCSCLPPFGELPCLESLELHTGSADVEYVEDNVHPGRFPSLRKLVIWDFSNLKGLLKMEGEKQFPVLEEMTFYWCPMFVIPTLSSVKTLKVIVTDATVLRSISNLRALTSLDISDNVEATSLPEEMFKSLANLKYLKISFFRNLKELPTSLASLNALKSLKFEFCDALESLPEEGVKGLTSLTELSVSNCMMLKCLPEGLQHLTALTTLTITQCP |
| superfamily: SSF52540 | 134-383 | SSF52540 | ERQAATRETGSVLTEPQVYGRDKEKDEIVKILINTASDAQKLSVLPILGMGGLGKTTLSQMVFNDQRVTERFYPKIWICISDDFNEKRLIKAIVESIEGKSLSDMDLAPLQKKLQELLNGKRYFLVLDDVWNEDQHKWANLRAVLKVGASGAFVLTTTRLEKVGSIMGTLQPYELSNLSPEDCWFLFMQRAFGHQEEINPNLMAIGKEIVKKCGGVPLAAKTLGGILRFKREEREWEHVRDSPIWNLPQD |
| Gene3D: G3DSA:3.40.50.300 | 153-294 | G3DSA:3.40.50.300 | GRDKEKDEIVKILINTASDAQKLSVLPILGMGGLGKTTLSQMVFNDQRVTERFYPKIWICISDDFNEKRLIKAIVESIEGKSLSDMDLAPLQKKLQELLNGKRYFLVLDDVWNEDQHKWANLRAVLKVGASGAFVLTTTRLE |
| HMMPfam: PF00931 IPR002182
|
155-433 | NB-ARC,NBS NB-ARC
|
DKEKDEIVKILINTASDAQKLSVLPILGMGGLGKTTLSQMVFNDQRVTERFYPKIWICISDDFNEKRLIKAIVESIEGKSLSDMDLAPLQKKLQELLNGKRYFLVLDDVWNEDQHKWANLRAVLKVGASGAFVLTTTRLEKVGSIMGTLQPYELSNLSPEDCWFLFMQRAFGHQEEINPNLMAIGKEIVKKCGGVPLAAKTLGGILRFKREEREWEHVRDSPIWNLPQDESSILPALRLSYHHLPLDLRQCFVYCAVFPKDTKMAKENLIAFWMAHGFL |
| FPrintScan: PR00364 IPR000767
|
177-192 | DISEASERSIST Disease resistance protein
|
VLPILGMGGLGKTTLS |
| FPrintScan: PR00364 IPR000767
|
250-264 | DISEASERSIST Disease resistance protein
|
LLNGKRYFLVLDDVW |
| FPrintScan: PR00364 IPR000767
|
346-360 | DISEASERSIST Disease resistance protein
|
CGGVPLAAKTLGGIL |
| superfamily: SSF52058 | 471-818 | SSF52058,LRR | KMHDLIHDLATSLFSANTSSSNIREINANYDGYMMSIGFAEVVSSYSPSLLQKFVSLRVLNLRNSNLNQLPSSIGDLVHLRYLDLSGNFRIRNLPKRLCKLQNLQTLDLHYCDSLSCLPKQTSKLGSLRNLLLDGCSLTSTPPRIGLLTCLKSLSCFVIGKRKGHQLGELKNLNLYGSISITKLDRVKKDTDAKEANLSAKANLHSLCLSWDLDGKHRYDSEVLEALKPHSNLKYLEINGFGGIRLPDWMNQSVLKNVVSIRIRGCENCSCLPPFGELPCLESLELHTGSADVEYVEDNVHPGRFPSLRKLVIWDFSNLKGLLKMEGEKQFPVLEEMTFYWCPMFVIP |
| Gene3D: G3DSA:3.80.10.10 | 491-710 | G3DSA:3.80.10.10 | SNIREINANYDGYMMSIGFAEVVSSYSPSLLQKFVSLRVLNLRNSNLNQLPSSIGDLVHLRYLDLSGNFRIRNLPKRLCKLQNLQTLDLHYCDSLSCLPKQTSKLGSLRNLLLDGCSLTSTPPRIGLLTCLKSLSCFVIGKRKGHQLGELKNLNLYGSISITKLDRVKKDTDAKEANLSAKANLHSLCLSWDLDGKHRYDSEVLEALKPHSNLKYLEING |
| ProfileScan: PS51450 IPR001611
|
526-547 | LRR,Leucine-rich repeat profile. Leucine-rich repeat
|
SLRVLNLRNSNLNQLPSSIGDL |
| HMMPfam: PF00560 IPR001611
|
526-546 | LRR_1 Leucine-rich repeat
|
SLRVLNLRNSNLNQLPSSIGD |
| HMMPfam: PF13855 | 549-608 | LRR_8,Leucine rich repeat | HLRYLDLSGNFRIRNLPKRLCKLQNLQTLDLHYCDSLSCLPKQTSKLGSLRNLLLDGCSL |
| ProfileScan: PS51450 IPR001611
|
549-572 | LRR,Leucine-rich repeat profile. Leucine-rich repeat
|
HLRYLDLSGNFRIRNLPKRLCKLQ |
| FPrintScan: PR00364 IPR000767
|
569-585 | DISEASERSIST Disease resistance protein
|
CKLQNLQTLDLHYCDSL |
| ProfileScan: PS51450 IPR001611
|
573-595 | LRR,Leucine-rich repeat profile. Leucine-rich repeat
|
NLQTLDLHYCDSLSCLPKQTSKL |
| ProfileScan: PS51450 IPR001611
|
597-618 | LRR,Leucine-rich repeat profile. Leucine-rich repeat
|
SLRNLLLDGCSLTSTPPRIGLL |
| Gene3D: G3DSA:3.80.10.10 | 724-954 | G3DSA:3.80.10.10 | VLKNVVSIRIRGCENCSCLPPFGELPCLESLELHTGSADVEYVEDNVHPGRFPSLRKLVIWDFSNLKGLLKMEGEKQFPVLEEMTFYWCPMFVIPTLSSVKTLKVIVTDATVLRSISNLRALTSLDISDNVEATSLPEEMFKSLANLKYLKISFFRNLKELPTSLASLNALKSLKFEFCDALESLPEEGVKGLTSLTELSVSNCMMLKCLPEGLQHLTALTTLTITQCPIV |
| superfamily: SSF52058 | 740-954 | SSF52058,LRR | SCLPPFGELPCLESLELHTGSADVEYVEDNVHPGRFPSLRKLVIWDFSNLKGLLKMEGEKQFPVLEEMTFYWCPMFVIPTLSSVKTLKVIVTDATVLRSISNLRALTSLDISDNVEATSLPEEMFKSLANLKYLKISFFRNLKELPTSLASLNALKSLKFEFCDALESLPEEGVKGLTSLTELSVSNCMMLKCLPEGLQHLTALTTLTITQCPIV |
| HMMPfam: PF13855 | 844-902 | LRR_8,Leucine rich repeat | ALTSLDISDNVEATSLPEEMFKSLANLKYLKISFFRNLKELPTSLASLNALKSLKFEFC |
| ProfileScan: PS51450 IPR001611
|
844-866 | LRR,Leucine-rich repeat profile. Leucine-rich repeat
|
ALTSLDISDNVEATSLPEEMFKS |
| HMMPfam: PF00560 IPR001611
|
918-940 | LRR_1 Leucine-rich repeat
|
SLTELSVSNCMMLKCLPEGLQHL |
List of References
Junqi Song, James M Bradeen, S Kristine Naess, John A Raasch, Susan M Wielgus, Geraldine T Haberlach, Jia Liu, Hanhui Kuang, Sandra Austin-Phillips, C Robin Buell, John P Helgeson, Jiming Jiang
Gene RB cloned from Solanum bulbocastanum confers broad spectrum resistance to potato late blight.
Proc. Natl. Acad. Sci. U.S.A.: 2003, 100(16);9128-33
PubMed:12872003
WorldCat.org
DOI
(P p)
List of Contributions
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